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in silico Plants

isP is an open-access journal dealing with all aspects of plant modelling. It provides a home for work from currently disparate research areas, publishing research at the interface between mathematics, computer science and plant biology.

Journal

Synthetic Biology

A fully open access journal which covers all aspects of synthetic biology; including papers on the mathematical modelling and practical engineering in the field.

Journal Article

Oligonucleotide library assisted sequence mining reveals promoter sequences with distinct temporal expression dynamics for applications in Curvibacter sp. AEP1-3

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Maurice Mager and others

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Oligonucleotide library assisted sequence mining reveals promoter sequences with distinct temporal expression dynamics for applications in Curvibacter sp. AEP1-3 Open Access

Minimal shuttle vectors for Saccharomyces cerevisiae Open Access

Synthetic biology design principles enable efficient bioproduction of Heparosan with low molecular weight and low polydispersion index for the biomedical industry Open Access

Simulations predict stronger CRISPRi transcriptional repression in plants for identical than heterogeneous gRNA target sites Open Access

Cell-free biosensor with automated acoustic liquid handling for rapid and scalable characterization of cellobiohydrolases on microcrystalline cellulose Open Access

OT-Mation: an open-source code for parsing CSV files into Python scripts for control of OT-2 liquid-handling robotics Open Access

Engineering a custom-sized DNA scaffold for more efficient DNA origami-based nucleic acid data storage Open Access

Two highly specific growth-coupled biosensor for glycolaldehyde detection across micromolar and millimolar concentrations Open Access

In silico prediction of loop-mediated isothermal amplification using a generalized linear model Open Access

biGMamAct: efficient CRISPR/Cas9-mediated docking of large functional DNA cargoes at the ACTB locus Open Access

Biosensor characterization: formal methods from the perspective of proteome fractions Open Access

Inert splint-driven oligonucleotide assembly Open Access

CryptKeeper: a negative design tool for reducing unintentional gene expression in bacteria Open Access

Successful adaptation of a MinION nanopore for protein sequencing Open Access

In- & Out-Cloning: plasmid toolboxes for scarless transcription unit and modular Golden Gate acceptor plasmid assembly Open Access

BioRxToolbox: a computational framework to streamline genetic circuit design in molecular data communications Open Access

New gene sensors enable precise cell monitoring and control without altering gene sequence Open Access

In vitro transcription-based biosensing of glycolate for prototyping of a complex enzyme cascade Open Access

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Oligonucleotide library assisted sequence mining reveals promoter sequences with distinct temporal expression dynamics for applications in Curvibacter sp. AEP1-3

Minimal shuttle vectors for Saccharomyces cerevisiae

Synthetic biology design principles enable efficient bioproduction of Heparosan with low molecular weight and low polydispersion index for the biomedical industry

Simulations predict stronger CRISPRi transcriptional repression in plants for identical than heterogeneous gRNA target sites

Cell-free biosensor with automated acoustic liquid handling for rapid and scalable characterization of cellobiohydrolases on microcrystalline cellulose

OT-Mation: an open-source code for parsing CSV files into Python scripts for control of OT-2 liquid-handling robotics

Engineering a custom-sized DNA scaffold for more efficient DNA origami-based nucleic acid data storage

Two highly specific growth-coupled biosensor for glycolaldehyde detection across micromolar and millimolar concentrations

In silico prediction of loop-mediated isothermal amplification using a generalized linear model

biGMamAct: efficient CRISPR/Cas9-mediated docking of large functional DNA cargoes at the ACTB locus

Biosensor characterization: formal methods from the perspective of proteome fractions

Inert splint-driven oligonucleotide assembly

CryptKeeper: a negative design tool for reducing unintentional gene expression in bacteria

Successful adaptation of a MinION nanopore for protein sequencing

In- & Out-Cloning: plasmid toolboxes for scarless transcription unit and modular Golden Gate acceptor plasmid assembly

BioRxToolbox: a computational framework to streamline genetic circuit design in molecular data communications

New gene sensors enable precise cell monitoring and control without altering gene sequence

In vitro transcription-based biosensing of glycolate for prototyping of a complex enzyme cascade