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User-friendly interface with autofill option to (A) select species using au...
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Database
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FungiProteomeDB: a database for the molecular weight and isoelectric points of the fungal proteomes
Published: 16 March 2023
Figure 5.
User-friendly interface with autofill option to (A) select species using auto-filling options or from a drop-down list and (B) search specific proteome using accession numbers.
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Home page of the FungiProteomeDB. It shows the basic information about the ...
in
Database
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FungiProteomeDB: a database for the molecular weight and isoelectric points of the fungal proteomes
Published: 16 March 2023
Figure 1.
Home page of the FungiProteomeDB. It shows the basic information about the DB.
Image
Time efficient search interface by species and their attribute.
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Database
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FungiProteomeDB: a database for the molecular weight and isoelectric points of the fungal proteomes
Published: 16 March 2023
Figure 2.
Time efficient search interface by species and their attribute.
Image
Customized search results using the substring search mode of proteome searc...
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Database
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FungiProteomeDB: a database for the molecular weight and isoelectric points of the fungal proteomes
Published: 16 March 2023
Figure 6.
Customized search results using the substring search mode of proteome search interface.
Journal Article
FungiProteomeDB: a database for the molecular weight and isoelectric points of the fungal proteomes
Database, Volume 2023, 2023, baad004, https://doi.org/10.1093/database/baad004
Published: 16 March 2023
Image
Virtual 2D map of fungal proteome. A representative 2D proteome map of ...
in
Database
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FungiProteomeDB: a database for the molecular weight and isoelectric points of the fungal proteomes
Published: 16 March 2023
Figure 3.
Virtual 2D map of fungal proteome. A representative 2D proteome map of Sphaerobolus stellatus is presented here.
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Proteome search interface of substring search mode. User can search the pro...
in
Database
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FungiProteomeDB: a database for the molecular weight and isoelectric points of the fungal proteomes
Published: 16 March 2023
Figure 4.
Proteome search interface of substring search mode. User can search the proteome data using any one option or multiple options.
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Proteome search interface of multi-select search mode. User can search the ...
in
Database
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FungiProteomeDB: a database for the molecular weight and isoelectric points of the fungal proteomes
Published: 16 March 2023
Figure 7.
Proteome search interface of multi-select search mode. User can search the proteome data using any one option or multiple options.
Image
Customized search results using the multi-string search mode of proteome se...
in
Database
>
FungiProteomeDB: a database for the molecular weight and isoelectric points of the fungal proteomes
Published: 16 March 2023
Figure 8.
Customized search results using the multi-string search mode of proteome search interface.
Journal Article
AFTM: a database of transmembrane regions in the human proteome predicted by AlphaFold
Database, Volume 2023, 2023, baad008, https://doi.org/10.1093/database/baad008
Published: 14 March 2023
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(a) Statistics of comparisons of TMSs annotated by AFTM (A), UniProt (U) an...
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Database
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AFTM: a database of transmembrane regions in the human proteome predicted by AlphaFold
Published: 14 March 2023
Figure 1.
(a) Statistics of comparisons of TMSs annotated by AFTM (A), UniProt (U) and HTP (H). AUH: TMSs are consistent among the three methods. AU\H: TMSs are consistent between AFTM and UniProt, but inconsistent compared to HTP. The same annotation is applied for AH\U and HU\A. A\U\H: TMSs are inconsistent
Journal Article
dbAQP-SNP: a database of missense single-nucleotide polymorphisms in human aquaporins
Database, Volume 2023, 2023, baad012, https://doi.org/10.1093/database/baad012
Published: 13 March 2023
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Screenshot of the dbAQP-SNP Search page.
Published: 13 March 2023
Figure 3.
Screenshot of the dbAQP-SNP Search page.
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The typical hour-glass fold adopted by MIP family members shown here corres...
Published: 13 March 2023
Figure 1.
The typical hour-glass fold adopted by MIP family members shown here corresponds to the human AQP4 (PDB ID: 3GD8; resolution: 1.8 Å). Only the backbone is shown in ribbon representation. The most conserved residue in each TM segment (TM1–TM6) and the two half-helices (LB and LE) are displayed and th
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Molecular plot of a specific human AQP with the residue in which missense S...
Published: 13 March 2023
Figure 2.
Molecular plot of a specific human AQP with the residue in which missense SNPs occurred shown in ball-and-stick representation. The helices (TM1–TM6) and the half-helices (LB and LE) are displayed in different colors.
Journal Article
Chemical identification and indexing in full-text articles: an overview of the NLM-Chem track at BioCreative VII
Database, Volume 2023, 2023, baad005, https://doi.org/10.1093/database/baad005
Published: 07 March 2023
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Indexing performance of the ensemble of all submissions as a function of th...
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Database
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Chemical identification and indexing in full-text articles: an overview of the NLM-Chem track at BioCreative VII
Published: 07 March 2023
Figure 3.
Indexing performance of the ensemble of all submissions as a function of the proportion of submissions including the identifier.
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Performance of the ensemble of all submissions using the strict normalizati...
in
Database
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Chemical identification and indexing in full-text articles: an overview of the NLM-Chem track at BioCreative VII
Published: 07 March 2023
Figure 2.
Performance of the ensemble of all submissions using the strict normalization measures as a function of the proportion of submissions containing the mention.
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Performance of the ensemble of all submissions using the strict NER measure...
in
Database
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Chemical identification and indexing in full-text articles: an overview of the NLM-Chem track at BioCreative VII
Published: 07 March 2023
Figure 1.
Performance of the ensemble of all submissions using the strict NER measures as a function of the proportion of submissions containing the mention.
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Comparing FANTOM6 lncRNA knockdowns followed by expression with gene–gene c...
Published: 04 March 2023
Figure 3.
Comparing FANTOM6 lncRNA knockdowns followed by expression with gene–gene co-expression correlation data from ARCHS4. For each lncRNA in FANTOM6, we computed the significance of the overlap between the top 200 DEGs for each lncRNA knockdown (|log2 fold change (FC)| > 0.5; false discovery rate (FD
