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Journal Article
Correction to: The overview of the BioRED (Biomedical Relation Extraction Dataset) track at BioCreative VIII
Database, Volume 2024, 2024, baae110, https://doi.org/10.1093/database/baae110
Published: 01 October 2024
Journal Article
Automated annotation of scientific texts for ML-based keyphrase extraction and validation
Database, Volume 2024, 2024, baae093, https://doi.org/10.1093/database/baae093
Published: 27 September 2024
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Flowchart of the artifact linkage process for label generation
Published: 27 September 2024
Figure 4.
Flowchart of the artifact linkage process for label generation
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Knowledge patterns in CPMKG. (a) Side effects refer to side effects or comp...
Published: 27 September 2024
Figure 1.
Knowledge patterns in CPMKG. (a) Side effects refer to side effects or complications that occur during the use of medication. Example: association between olanzapine and metabolic syndrome risk in schizophrenia patients. (b) Drug sensitivity refers to an individual’s propensity to exhibit a heighten
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Knowledge exploration in CPMKG. (a) Precision medicine knowledge list. A li...
Published: 27 September 2024
Figure 3.
Knowledge exploration in CPMKG. (a) Precision medicine knowledge list. A list centered on “warfarin,” comprising four distinct patterns. (b) Knowledge unit details. Illustrated by “warfarin treatment side effects,” it includes graphical representation, established conditions, evidence sources, and e
Journal Article
CPMKG: a condition-based knowledge graph for precision medicine
Database, Volume 2024, 2024, baae102, https://doi.org/10.1093/database/baae102
Published: 27 September 2024
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“SciKey’s” metadata generation pipeline and submodules.
Published: 27 September 2024
Figure 2.
“SciKey’s” metadata generation pipeline and submodules.
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Flowchart of the ontology-based process for label generation
Published: 27 September 2024
Figure 5.
Flowchart of the ontology-based process for label generation
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Distribution of derived labels.
Published: 27 September 2024
Figure 6.
Distribution of derived labels.
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Conditional knowledge-based schema of CPMKG. This schema includes foundatio...
Published: 27 September 2024
Figure 2.
Conditional knowledge-based schema of CPMKG. This schema includes foundational elements such as drugs, diseases, phenotypes, genes, and variations. “Drugs” cover pharmacological substances, “diseases” encompass pathological conditions, “variations” refer to differences in the human genome, “phenotyp
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Advanced application of CPMKG. (a) Personalized drug suggestion offers tail...
Published: 27 September 2024
Figure 4.
Advanced application of CPMKG. (a) Personalized drug suggestion offers tailored medical advice based on diagnostic outcomes and genetic backgrounds. Example: crucial factors for prescribing medication to breast cancer patients with the NC_000002.12:g.38071060G>A,C variant. (b) Pharmacogenomics
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Potential approaches for validating ML-generated keywords for unlabeled tex...
Published: 27 September 2024
Figure 1.
Potential approaches for validating ML-generated keywords for unlabeled texts when human labels are unavailable; our proposed approaches are shown in green.
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Overview of the automated labeling and metadata generation process. Built o...
Published: 27 September 2024
Figure 3.
Overview of the automated labeling and metadata generation process. Built on top of the “SciKey” module, the automated label generation process (shown in the rounded rectangle) takes in a text blob containing semantic information and a set of labels that are used for ML-generated keyword validation.
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Co-occurrence plot for all publication-derived labels. Most of the labels e...
Published: 27 September 2024
Figure 7.
Co-occurrence plot for all publication-derived labels. Most of the labels either do not co-occur at all (white space) or co-occur once (small orange circles).
Journal Article
PeptiHub: a curated repository of precisely annotated cancer-related peptides with advanced utilities for peptide exploration and discovery
Database, Volume 2024, 2024, baae092, https://doi.org/10.1093/database/baae092
Published: 20 September 2024
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Peptide-Based Strategies for Cancer Treatment.
Published: 20 September 2024
Figure 1.
Peptide-Based Strategies for Cancer Treatment.
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Amino acids physicochemical classes based on which grouped features are cat...
Published: 20 September 2024
Figure 6.
Amino acids physicochemical classes based on which grouped features are categorized in PeptiHub.
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The overall content of PeptiHub.
Published: 20 September 2024
Figure 2.
The overall content of PeptiHub.
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The overall components and utilities of PeptiHub.
Published: 20 September 2024
Figure 3.
The overall components and utilities of PeptiHub.
