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Illustration of the eight LSF–disease relation types in LSD600.
Published: 17 January 2025
Figure 1.
Illustration of the eight LSF–disease relation types in LSD600.
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LSD600 statistics for the eight distinct LSF–disease relation types.
Published: 17 January 2025
Figure 2.
LSD600 statistics for the eight distinct LSF–disease relation types.
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LSD600 statistics for eight distinct LSF–disease relation types per disease...
Published: 17 January 2025
Figure 3.
LSD600 statistics for eight distinct LSF–disease relation types per disease category.
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Performance plot for relation extraction across different relation types.
Published: 17 January 2025
Figure 6.
Performance plot for relation extraction across different relation types.
Journal Article
LSD600: the first corpus of biomedical abstracts annotated with lifestyle–disease relations
Database, Volume 2025, 2025, baae129, https://doi.org/10.1093/database/baae129
Published: 17 January 2025
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Distribution of disease and LSF mentions in LSD600 abstracts.
Published: 17 January 2025
Figure 5.
Distribution of disease and LSF mentions in LSD600 abstracts.
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An overview of the distribution of relations in LSD600.
Published: 17 January 2025
Figure 4.
An overview of the distribution of relations in LSD600.
Journal Article
Correction to: The landscape of microRNA interaction annotation: analysis of three rare disorders as a case study
Database, Volume 2025, 2025, baae131, https://doi.org/10.1093/database/baae131
Published: 13 January 2025
Journal Article
HoloFood Data Portal: holo-omic datasets for analysing host–microbiota interactions in animal production
Database, Volume 2025, 2025, baae112, https://doi.org/10.1093/database/baae112
Published: 11 January 2025
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The schema used for HoloFood animals and samples registered in BioSamples [...
Published: 11 January 2025
Figure 1.
The schema used for HoloFood animals and samples registered in BioSamples [ 8 ]. Individual animals are accessed as BioSamples, with metadata sections as shown on the left. Most of these metadata sections are shared between the two systems. Extraction-level (derived) samples are registered separatel
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Overview of the multiomic samples available in the HoloFood Data Portal for...
Published: 11 January 2025
Figure 3.
Overview of the multiomic samples available in the HoloFood Data Portal for each system. Different multiomics sample sets were extracted from animals in multiple trials and time points. Each row shows how many individual animals are available covering that multi-omic combination. Combinations are sh
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The primary dataset available in the data portal is a list of samples (regi...
Published: 11 January 2025
Figure 4.
The primary dataset available in the data portal is a list of samples (registered in BioSamples). The sample list (in the background of this composite screenshot) can be partitioned along different axes: in this case by system, omic type, and treatment. It can also be partitioned by host, as shown b
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Screenshot showing a sample detail page for a metagenomic sample (left). Th...
Published: 11 January 2025
Figure 5.
Screenshot showing a sample detail page for a metagenomic sample (left). The analysis of metagenomic samples is performed by and stored in MGnify [ 9 ]. The data portal shows a summary of this MGnify data and links to MGnify where users can browse the analysis dataset (right).
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The data collection process of DisGeNet: (a) the collection of node informa...
Published: 11 January 2025
Figure 2.
The data collection process of DisGeNet: (a) the collection of node information and (b) the collection of link information.
Journal Article
DisGeNet: a disease-centric interaction database among diseases and various associated genes
Database, Volume 2025, 2025, baae122, https://doi.org/10.1093/database/baae122
Published: 11 January 2025
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The statistics of DisGeNet: (a) six types of links network, (b) four types ...
Published: 11 January 2025
Figure 1.
The statistics of DisGeNet: (a) six types of links network, (b) four types of nodes, (c) statistics of links, and (d) the top 50 diseases associated with genes.
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Statistical comparison of data in DisGeNet: (a) node data and (b) link data...
Published: 11 January 2025
Figure 3.
Statistical comparison of data in DisGeNet: (a) node data and (b) link data.
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A general use process of DisGeNet: (a) the interface of the search module w...
Published: 11 January 2025
Figure 5.
A general use process of DisGeNet: (a) the interface of the search module with “AIDS” input as the retrieved disease in the “Search” page (disease name used as an example), (b) fuzzy search result page of “AIDS”, (c) filtering links by node types, (d) the search results shown in a list manner, and (
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Genome catalogues were created for each system. HoloFood-derived metagenome...
Published: 11 January 2025
Figure 2.
Genome catalogues were created for each system. HoloFood-derived metagenome-assembled genomes were combined with other publicly available chicken and fish data to produce genome catalogues for the MGnify Genomes resource [ 11 ]. In this example, the HoloFood genome clusters with three other genomes
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Interface of DisGeNet: (a) search for all associations and interactions, an...
Published: 11 January 2025
Figure 4.
Interface of DisGeNet: (a) search for all associations and interactions, and (b) browse all associations and interactions.
