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Database statistics: (a) total SSRs identified in genomic sequences of seve...
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The Genomic SSR Millets Database (GSMDB): enhancing genetic resources for sustainable agriculture
Published: 15 November 2024
Figure 2.
Database statistics: (a) total SSRs identified in genomic sequences of seven millets, (b) total mono-hexa and compound repeats identified in genomic sequences of millets, (c) total SSRs identified in genic, non-genic, and overlapping of genic–non-genic region in millet species, and (d) Top 10 repeat
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Database snapshots: SSR tab (a) users can select the name of organism and o...
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The Genomic SSR Millets Database (GSMDB): enhancing genetic resources for sustainable agriculture
Published: 15 November 2024
Figure 3.
Database snapshots: SSR tab (a) users can select the name of organism and other parameters step by step, (b) detail of SSRs, (c) window to select flanking sequence and parameters to design primer pairs, (d) details of designed primer pairs, (e) gene annotation of respective SSR, (f) JBrowse tab to s
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Database architecture and user interface: a complete workflow.
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The Genomic SSR Millets Database (GSMDB): enhancing genetic resources for sustainable agriculture
Published: 15 November 2024
Figure 1.
Database architecture and user interface: a complete workflow.
Journal Article
The Genomic SSR Millets Database (GSMDB): enhancing genetic resources for sustainable agriculture
Database, Volume 2024, 2024, baae114, https://doi.org/10.1093/database/baae114
Published: 15 November 2024
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ETL system implemented for processing a data source and loading the collect...
Published: 08 November 2024
Figure 3.
ETL system implemented for processing a data source and loading the collected information into Peptipedia DB. The ETL system implemented in Peptipedia facilitates the process of a new data source to extract and load the information into Peptipedia DB. First, the different information is extracted fr
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Homepage for Peptipedia DB and Peptitools, the two main services implemente...
Published: 08 November 2024
Figure 4.
Homepage for Peptipedia DB and Peptitools, the two main services implemented into Peptipedia. (a) Homepage generated to access on Peptipedia DB. This homepage has (i) the full menu with all functionalities available on the system, (ii) a schematic representation of the implemented workflow to proces
Journal Article
athisomiRDB: A comprehensive database of Arabidopsis isomiRs
Database, Volume 2024, 2024, baae115, https://doi.org/10.1093/database/baae115
Published: 08 November 2024
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Overview of the annotation pipeline and summary of annotated isomiRs. (a) A...
Published: 08 November 2024
Figure 1.
Overview of the annotation pipeline and summary of annotated isomiRs. (a) A total of 2757 publicly available Arabidopsis sRNA-seq libraries were collected from NCBI SRA databases and processed with a unified isomiRmap pipeline. All the isomiR-related information can be accessed via keyword-based s
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Overview of the athisomiRDB web interface features. (a) Browsing options fo...
Published: 08 November 2024
Figure 2.
Overview of the athisomiRDB web interface features. (a) Browsing options for isomiR entries based on miRNA family, tissue type, developmental stage, or genotype. (b) Summary of available search engines for querying isomiR entries, with an example snapshot showing subset results in response to the ke
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Characteristics of isomiRs bound to each AGO complex. (a) Summary of normal...
Published: 08 November 2024
Figure 3.
Characteristics of isomiRs bound to each AGO complex. (a) Summary of normalized expression for all isomiRs bound to each AGO complex. (b) Comparison of small RNA populations bound by the nine AGO complexes, with numbers indicating unique overlapping isomiRs. (c) Size distribution of isomiRs bound by
Journal Article
Peptipedia v2.0: a peptide sequence database and user-friendly web platform. A major update
Database, Volume 2024, 2024, baae113, https://doi.org/10.1093/database/baae113
Published: 08 November 2024
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Overview of Peptipedia v2.0. This new version of Peptipedia includes 100...
Published: 08 November 2024
Figure 1.
Overview of Peptipedia v2.0. This new version of Peptipedia includes 100 000 peptides registered with functional biological activities, extracted from 70 data sources. Different physicochemical properties and enrichment analyses were addressed to characterize the peptides collected. The servic
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Updated functional biological activity tree implemented in Peptipedia v2.0....
Published: 08 November 2024
Figure 2.
Updated functional biological activity tree implemented in Peptipedia v2.0. In this work, we have updated the functional biological activity tree to include new activities related to taste, molecular binding, and cosmetics and dermatology. Additionally, various antiviral activities have been added,
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Wild-type and variant-containing isomiRs and their targets. (a-b) Two wild-...
Published: 08 November 2024
Figure 4.
Wild-type and variant-containing isomiRs and their targets. (a-b) Two wild-type isomiRs and their corresponding variant-containing isomiRs (based on known SNPs from the 1001 Genomes Project data), along with their respective expression values in athisomiRDB across samples. Below each genotype, the n
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Illustration of terms extracted from the GPT response.
Published: 23 October 2024
Figure 4.
Illustration of terms extracted from the GPT response.
Journal Article
PheNormGPT: a framework for extraction and normalization of key medical findings
Database, Volume 2024, 2024, baae103, https://doi.org/10.1093/database/baae103
Published: 23 October 2024
Journal Article
Is metadata of articles about COVID-19 enough for multilabel topic classification task?
Database, Volume 2024, 2024, baae106, https://doi.org/10.1093/database/baae106
Published: 21 October 2024
