1-20 of 8064
Sort by
Journal Article
Ruiqing Wang and others
Database, Volume 2024, 2024, baae007, https://doi.org/10.1093/database/baae007
Published: 12 February 2024
Image
Published: 12 February 2024
Figure 2. SEPDB result page.
Image
Published: 12 February 2024
Figure 1. Flowchart of SEPDB construction. SEPDB collects and processes relevant protein data from several databases and manually adds literature data from serum, exosomes and tissue culture to predict large-scale amino acid sequences. These data are used to implement complex web interfaces.
Image
Published: 12 February 2024
Figure 3. One example illustrates the multiple validation channels SEPDB provides for secreted proteins, helping to uncover protein function. ( A ) Secreted proteins validate evidence information. ( B ) Tissue-specific transcript data of alpha-2 macroglobulin. ( C ) Tissue-specific proteomic data of alpha-2 m
Journal Article
Alexander Bach and others
Database, Volume 2024, 2024, baae004, https://doi.org/10.1093/database/baae004
Published: 01 February 2024
Image
Published: 01 February 2024
Figure 1. Sampling sites with spider assemblage data available in ARAapp, with data from 26 October 2023. Alt Text: A map of Germany and Austria with dots marking the sampling sites available for analysis in ARAapp.
Image
Published: 01 February 2024
Figure 2. Distribution of the shading parameter values for X. nemoralis and X. miniata , and the graphs were downloaded on 26 October 2023. Alt Text: Two histograms depict the distribution patterns of two wolf spider species, X. nemoralis and X. miniata, along a shading gradient ranging from 0 (open lan
Image
Published: 01 February 2024
Figure 3. Habitat occurrence of M. trilobatus according to the EUNIS habitat classification at the third level within Class E: grasslands and lands dominated by forbs, mosses or lichens. The frequency data for the individual classes are as follows (sites with the presence of M. trilobatus /total sites in A
Image
Published: 31 January 2024
Figure 2. The architecture of NanoLAS website. iCAN website includes five search entries (left part) and a interface for users (right part). Alt text: This diagram provides an overview of the website’s functional design and user interaction flow. The left side of the diagram displays five search entry poin
Image
Published: 31 January 2024
Figure 4. An example of information page of nanobodies (comparable/docking view). Alt text: Screenshot of a comparison page within the NanoLAS database betweentwo specific nanobodies. It includes sections like structural data, 3D docking views, sequence information and related metadata. The layout is desig
Journal Article
Shuchang Xiong and others
Database, Volume 2024, 2024, baae003, https://doi.org/10.1093/database/baae003
Published: 31 January 2024
Image
Published: 31 January 2024
Figure 3. The distribution of CDR3 lengths in the NanoLAS database by source organism. Alt text: The bar chart depicts the distribution of CDR3 lengths within the NanoLAS database, categorized by various source organisms like human, camel and llama. Each organism is represented by a set of bars indicating
Image
Published: 31 January 2024
Figure 1. The process of data collection and processing of NanoLAS database. Alt text: The flowchart illustrates a systematic approach to database construction, showing the data collection and processing workflow for the NanoLAS database. It starts with data extraction from sources like PDB, SdAb-DB and Op
Journal Article
Tae Jin Lee and others
Database, Volume 2024, 2024, baae001, https://doi.org/10.1093/database/baae001
Published: 29 January 2024
Image
Published: 29 January 2024
Figure 1. Protein Summary page containing accession ID, gene symbol, protein name, gene names, PSM counts and detection level. Alt text: Screen capture of the database’s ‘Protein Summary’ page, which contains a table with columns titled ‘Accession ID’, ‘Gene Symbol’, ‘Protein Name’, ‘Gene Names’, ‘Total PS
Image
Published: 29 January 2024
Figure 4. Plot showing the number of sequences for each country for the four IUCN Red Listed insect orders in the final database (A), and plot showing the number of species for each country for the four IUCN Red Listed insect orders in the final database (B), where grey color refers to the absence of informat
Image
Published: 29 January 2024
Figure 2. (A) Protein Data page providing visual display of LC-MS/MS analysis of proteins by sample ID and with (B) filters applied by search (right arrow) and by sorting ascending or descending (left arrow). Alt text for Figure 2A: shows a screen capture of the database’s ‘Protein Data’ page, which contai
Image
Published: 29 January 2024
Figure 4. Data download options for protein and clinical data sets. Alt text: Screen capture of the database’s ‘Data Download’ page, which contains text stating ‘Please click the link below to download our latest dataset’, followed by links titled ‘PSM Matrix’, ‘Clinical Data’, ‘Raw Protein Data’ and ‘Prot
Journal Article
Serena Baini and Alessio De Biase
Database, Volume 2024, 2024, baae002, https://doi.org/10.1093/database/baae002
Published: 29 January 2024
Image
Published: 29 January 2024
Figure 1. Flowchart showing the database building process. Alt text: Diagram showing the steps of the database building process as described in the main text.