1-20 of 8932
Journal Article
A longitudinal analysis of function annotations of the human proteome reveals consistently high biases
Database, Volume 2025, 2025, baaf036, https://doi.org/10.1093/database/baaf036
Published: 07 May 2025
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(a) Barplot displaying average Gini coefficient (0–1) from 2013 to 2022. Ea...
Published: 07 May 2025
Figure 2.
(a) Barplot displaying average Gini coefficient (0–1) from 2013 to 2022. Each bar indicates one of three knowledge metrics of human proteins: term count (dark green), unique term count (light green), and information content (black) in one of three GO aspects. Error bars extend one standard deviation
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Gini coefficient (0–1) of the number of FPEs of human proteins.
Published: 07 May 2025
Figure 3.
Gini coefficient (0–1) of the number of FPEs of human proteins.
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Information content and number of FPEs (in log scale) of proteins in 2022. ...
Published: 07 May 2025
Figure 4.
Information content and number of FPEs (in log scale) of proteins in 2022. Each black dot represents the number of FPEs and the information content per protein within an aspect (MFO, BPO, CCO) in 2022. Highlighted genes (coloured dots) have one data point for each year from 2013 to 2022. Highlighted
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Boxplots showing Spearman’s coefficient between the number of FPEs and the ...
Published: 07 May 2025
Figure 5.
Boxplots showing Spearman’s coefficient between the number of FPEs and the gain in information content (in MFO and BPO) of disease-associated proteins. Triangles (with disease names labelled) indicate diseases with a significant Spearman correlation, and circles indicate diseases without significant
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The figure shows the diversity and distribution of anticancer peptides.
Published: 07 May 2025
Figure 2.
The figure shows the diversity and distribution of anticancer peptides.
Journal Article
CancerPPD2: an updated repository of anticancer peptides and proteins
Database, Volume 2025, 2025, baaf030, https://doi.org/10.1093/database/baaf030
Published: 07 May 2025
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Information content of proteins studied experimentally from 2013 to 2022 in...
Published: 07 May 2025
Figure 1.
Information content of proteins studied experimentally from 2013 to 2022 in (a) articles describing high-throughput (>100 proteins per article; blue boxes) vs. low-throughput experiments (≤100 proteins per article; orange boxes) and (b) all articles. Each box shows the distribution of information
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(a) Barplot of the number of years between annotation and publication for e...
Published: 07 May 2025
Figure 6.
(a) Barplot of the number of years between annotation and publication for experimental GO annotations of human proteins. The vertical line shows the median of this distribution at 4 years. (b) Barplot of the distribution of publication year and annotation year for GO experimental annotations of huma
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The figure shows the complete architecture of the database.
Published: 07 May 2025
Figure 1.
The figure shows the complete architecture of the database.
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Schematic diagram of the data processing and database structure of STCDB4ND...
Published: 02 May 2025
Figure 2.
Schematic diagram of the data processing and database structure of STCDB4ND in this study.
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The whole map of the the network of neurological diseases related cell sign...
Published: 02 May 2025
Figure 4.
The whole map of the the network of neurological diseases related cell signaling transduction pathways, and figures of heatmap generated from disease data collected from DiSignAtlas website and the PPI network of TUBA4A from NDAtlas website.
Journal Article
STCDB4ND: a signal transduction classification database for neurological diseases
Database, Volume 2025, 2025, baaf032, https://doi.org/10.1093/database/baaf032
Published: 02 May 2025
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The flowchart of the key factor recognition algorithm, in which M is the tr...
Published: 02 May 2025
Figure 1.
The flowchart of the key factor recognition algorithm, in which M is the transition matrix, R refers to the vector of node-ranks, d is damping factor, and ε is the iteration accuracy.
Journal Article
A teaching and training framework to promote findable, accessible, interoperable, and reusable data generation in agriculture
Database, Volume 2025, 2025, baaf034, https://doi.org/10.1093/database/baaf034
Published: 25 April 2025
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Database (DB) stakeholders, their roles in data management, and how the edu...
Published: 25 April 2025
Figure 2.
Database (DB) stakeholders, their roles in data management, and how the educational curriculum will positively impact them.
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How biological databases (DBs) implement the FAIR principles and promote FA...
Published: 25 April 2025
Figure 1.
How biological databases (DBs) implement the FAIR principles and promote FAIR data.
Journal Article
Mapping assays to the key characteristics of carcinogens to support decision-making
Database, Volume 2025, 2025, baaf026, https://doi.org/10.1093/database/baaf026
Published: 22 April 2025
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Physiological disorder image database system. (a) Main screen interface of ...
Published: 22 April 2025
Figure 5.
Physiological disorder image database system. (a) Main screen interface of crop physiological disorder image management system (b) Crop stress and crop information included in the informational list category (c) Project creation list. (d) The database can be aligned in a list form of images taken by
