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Tissue diversity and sample counts in cyprinid species. Donut charts illust... Open Access
Published: 31 December 2025
Figure 1.
Tissue diversity and sample counts in cyprinid species. Donut charts illustrate the number of BioProjects and the distribution of RNA-seq samples across different tissues for each of the five major Cyprinidae species included in this study. The charts highlight the extensive tissue diversity and sam
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Workflow for the construction of the Cyprinidae Expression Atlas. A schemat... Open Access
Published: 31 December 2025
Figure 2.
Workflow for the construction of the Cyprinidae Expression Atlas. A schematic overview of the analytical pipeline, detailing the key steps from raw RNA-seq data preprocessing, alignment to reference genomes, expression quantification (FPKM/TPM), coding potential estimation, functional annotation, an
Journal Article
CyExpDB: a web-based multi-species tissue-specific gene expression platform for functional genomics in Cyprinidae fish Open Access
Database, Volume 2025, 2025, baaf087, https://doi.org/10.1093/database/baaf087
Published: 31 December 2025
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Three-tier architecture and data structure of CyExpDB. A schematic represen... Open Access
Published: 31 December 2025
Figure 3.
Three-tier architecture and data structure of CyExpDB. A schematic representation of the CyExpDB relational database, showing its three-tier architecture (presentation, application, and data layers) and the integration of tissue-specific gene expression data across Cyprinidae species.
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Histogram showing the distribution of highly specific, intermediate, and ho... Open Access
Published: 31 December 2025
Figure 4.
Histogram showing the distribution of highly specific, intermediate, and housekeeping genes across the five major Cyprinidae species, based on tau (τ) score classification.
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Overview and workflow of the Cyprinidae Expression Database (CyExpDB). (A) ... Open Access
Published: 31 December 2025
Figure 5.
Overview and workflow of the Cyprinidae Expression Database (CyExpDB). (A) Home page providing access to database sections and species selection. (B) Genome overview page displaying species-specific genomic information and data download options, with a selection panel for tissue type and gene class.
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The overall functionality of the database is mainly focused on search, brow... Open Access
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The Odonata of China: a data-driven, open-access resource for biodiversity research and conservation
Published: 23 December 2025
Figure 1.
The overall functionality of the database is mainly focused on search, browsing, sequence alignment, image display, and contact information. It adopts a front-end and back-end separation technology, with the front-end and back-end respectively paired with the mainstream development frameworks React
Journal Article
The Odonata of China: a data-driven, open-access resource for biodiversity research and conservation Open Access
Database, Volume 2025, 2025, baaf077, https://doi.org/10.1093/database/baaf077
Published: 23 December 2025
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An overview of Odonata of China database. The main data contents and statis... Open Access
in
The Odonata of China: a data-driven, open-access resource for biodiversity research and conservation
Published: 23 December 2025
Figure 2.
An overview of Odonata of China database. The main data contents and statistics including search, identification, photos, and phylogeny.
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Illustration of browse and search interfaces in Odonata of China database. ... Open Access
in
The Odonata of China: a data-driven, open-access resource for biodiversity research and conservation
Published: 23 December 2025
Figure 3.
Illustration of browse and search interfaces in Odonata of China database. (A) The search web interface of Odonata of China database. (B) The introduction web interface. (C) The phylogeny web interface. (D) The identification web interface. (E) The photo display page. (F) Display the page of the pub
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Layout of the structure for identifier minting workflow published on KNIME ... Open Access
Published: 09 December 2025
Figure 1.
Layout of the structure for identifier minting workflow published on KNIME Community Hub.
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Layout of the structure for KNIME annotation workflow published on KNIME Co... Open Access
Published: 09 December 2025
Figure 2.
Layout of the structure for KNIME annotation workflow published on KNIME Community Hub.
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Example dashboard output using the KNIME annotation tool for a single compo... Open Access
Published: 09 December 2025
Figure 5.
Example dashboard output using the KNIME annotation tool for a single compound, Diclofenac sodium.
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Tazarotene; chemical, pharmaceutical, and biochemical information taken fro... Open Access
Published: 09 December 2025
Figure 12.
Tazarotene; chemical, pharmaceutical, and biochemical information taken from the ChEMBL Annotation Dashboard.
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Overlap of druggable proteome in Homo sapiens between the R4A set and ChEMB... Open Access
Published: 09 December 2025
Figure 16.
Overlap of druggable proteome in Homo sapiens between the R4A set and ChEMBL chemical compounds for targets associated with clinical compounds. (a) Overall overlap of UniProt IDs; (b) overlap of UniProt IDs by target class. Count is based on the number of unique UniProt IDs, considering binding and
Journal Article
From library to landscape: integrative annotation workflows for compound libraries in drug repurposing Open Access
Database, Volume 2025, 2025, baaf081, https://doi.org/10.1093/database/baaf081
Published: 09 December 2025
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Neo4j dashboard. (a) compound search panel, (b) compound’s analogues space ... Open Access
Published: 09 December 2025
Figure 6.
Neo4j dashboard. (a) compound search panel, (b) compound’s analogues space search panel, (c) target search panel.
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Compound-centric information retrieved by the KNIME and Python annotation p... Open Access
Published: 09 December 2025
Figure 7.
Compound-centric information retrieved by the KNIME and Python annotation pipelines (blue and red bars, respectively). The similarity between the two sets was measured using the Jaccard Index (black line). Data from binding and functional assays with a pChEMBL value ≥ 6 and a confidence score ≥ 8 we
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(a) ChEMBL protein family classification from KNIME’s annotation; (b) ChEMB... Open Access
Published: 09 December 2025
Figure 9.
(a) ChEMBL protein family classification from KNIME’s annotation; (b) ChEMBL protein family classification from Python’s annotation. Data from binding and functional assays with a pChEMBL value ≥ 6 and a confidence score ≥ 8 were considered.
