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Journal Article

CPDMS: a database system for crop physiological disorder management

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Jae-Hyeon Oh and others
Database, Volume 2025, 2025, baaf031, https://doi.org/10.1093/database/baaf031
Published: 22 April 2025
Journal Article

Localizatome: a database for stress-dependent subcellular localization changes in proteins

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Takahide Matsushima and others
Database, Volume 2025, 2025, baaf028, https://doi.org/10.1093/database/baaf028
Published: 21 April 2025
Journal Article

AFED, a comprehensive resource for Aspergillus flavus gene expression profiling

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Brian M Mack and Matthew D Lebar
Database, Volume 2025, 2025, baaf033, https://doi.org/10.1093/database/baaf033
Published: 18 April 2025
Journal Article

mirTarCLASH: a comprehensive miRNA target database based on chimeric read-based experiments

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Tzu-Hsien Yang and others
Database, Volume 2025, 2025, baaf023, https://doi.org/10.1093/database/baaf023
Published: 05 April 2025
Journal Article

GrameneOryza: a comprehensive resource for Oryza genomes, genetic variation, and functional data

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Sharon Wei and others
Database, Volume 2025, 2025, baaf021, https://doi.org/10.1093/database/baaf021
Published: 05 April 2025
Journal Article

Post-composing ontology terms for efficient phenotyping in plant breeding

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Naama Menda and others
Database, Volume 2025, 2025, baaf020, https://doi.org/10.1093/database/baaf020
Published: 21 March 2025
Journal Article

A comprehensive experimental comparison between federated and centralized learning

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Swier Garst and others
Database, Volume 2025, 2025, baaf016, https://doi.org/10.1093/database/baaf016
Published: 19 March 2025
Journal Article

gymnotoa-db: a database and application to optimize functional annotation in gymnosperms

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Fernando Mora-Márquez and others
Database, Volume 2025, 2025, baaf019, https://doi.org/10.1093/database/baaf019
Published: 06 March 2025
Journal Article

PotatoBSLnc: a curated repository of potato long noncoding RNAs in response to biotic stress

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Pingping Huang and others
Database, Volume 2025, 2025, baaf015, https://doi.org/10.1093/database/baaf015
Published: 22 February 2025
Journal Article

MANUDB: database and application to retrieve and visualize mammalian NUMTs

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Bálint Biró and others
Database, Volume 2025, 2025, baaf009, https://doi.org/10.1093/database/baaf009
Published: 21 February 2025
Journal Article

Integrating AI-powered text mining from PubTator into the manual curation workflow at the Comparative Toxicogenomics Database

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Thomas C Wiegers and others
Database, Volume 2025, 2025, baaf013, https://doi.org/10.1093/database/baaf013
Published: 20 February 2025
Journal Article

Assessing the performance of generative artificial intelligence in retrieving information against manually curated genetic and genomic data

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Elly Poretsky and others
Database, Volume 2025, 2025, baaf011, https://doi.org/10.1093/database/baaf011
Published: 17 February 2025
Journal Article

TumorAgDB1.0: tumor neoantigen database platform

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Yan Shao and others
Database, Volume 2025, 2025, baaf010, https://doi.org/10.1093/database/baaf010
Published: 13 February 2025
Journal Article

Building resource-efficient community databases using open-source software

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Sook Jung and others
Database, Volume 2025, 2025, baaf005, https://doi.org/10.1093/database/baaf005
Published: 12 February 2025
Journal Article

LitSumm: large language models for literature summarization of noncoding RNAs

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Andrew Green and others
Database, Volume 2025, 2025, baaf006, https://doi.org/10.1093/database/baaf006
Published: 05 February 2025
Journal Article

Helping authors produce FAIR taxonomic data: evaluation of an author-driven phenotype data production prototype

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Limin Zhang and others
Database, Volume 2025, 2025, baae097, https://doi.org/10.1093/database/baae097
Published: 29 January 2025
Journal Article

The TOXIN knowledge graph: supporting animal-free risk assessment of cosmetics

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Sara Sepehri and others
Database, Volume 2025, 2025, baae121, https://doi.org/10.1093/database/baae121
Published: 28 January 2025
Journal Article

BuffExDb: web-based tissue-specific gene expression resource for breeding and conservation programmes in Bubalus bubalis

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Naina Kumari and others
Database, Volume 2025, 2025, baae128, https://doi.org/10.1093/database/baae128
Published: 24 January 2025
Journal Article

A change language for ontologies and knowledge graphs

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Harshad Hegde and others
Database, Volume 2025, 2025, baae133, https://doi.org/10.1093/database/baae133
Published: 22 January 2025
Journal Article

Standardized pipelines support and facilitate integration of diverse datasets at the Rat Genome Database

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Jennifer R Smith and others
Database, Volume 2025, 2025, baae132, https://doi.org/10.1093/database/baae132
Published: 22 January 2025