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Journal Article

Post-composing ontology terms for efficient phenotyping in plant breeding

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Naama Menda and others
Database, Volume 2025, 2025, baaf020, https://doi.org/10.1093/database/baaf020
Published: 21 March 2025
Journal Article

A comprehensive experimental comparison between federated and centralized learning

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Swier Garst and others
Database, Volume 2025, 2025, baaf016, https://doi.org/10.1093/database/baaf016
Published: 19 March 2025
Journal Article

gymnotoa-db: a database and application to optimize functional annotation in gymnosperms

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Fernando Mora-Márquez and others
Database, Volume 2025, 2025, baaf019, https://doi.org/10.1093/database/baaf019
Published: 06 March 2025
Journal Article

PotatoBSLnc: a curated repository of potato long noncoding RNAs in response to biotic stress

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Pingping Huang and others
Database, Volume 2025, 2025, baaf015, https://doi.org/10.1093/database/baaf015
Published: 22 February 2025
Journal Article

MANUDB: database and application to retrieve and visualize mammalian NUMTs

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Bálint Biró and others
Database, Volume 2025, 2025, baaf009, https://doi.org/10.1093/database/baaf009
Published: 21 February 2025
Journal Article

Integrating AI-powered text mining from PubTator into the manual curation workflow at the Comparative Toxicogenomics Database

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Thomas C Wiegers and others
Database, Volume 2025, 2025, baaf013, https://doi.org/10.1093/database/baaf013
Published: 20 February 2025
Journal Article

Assessing the performance of generative artificial intelligence in retrieving information against manually curated genetic and genomic data

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Elly Poretsky and others
Database, Volume 2025, 2025, baaf011, https://doi.org/10.1093/database/baaf011
Published: 17 February 2025
Journal Article

TumorAgDB1.0: tumor neoantigen database platform

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Yan Shao and others
Database, Volume 2025, 2025, baaf010, https://doi.org/10.1093/database/baaf010
Published: 13 February 2025
Journal Article

Building resource-efficient community databases using open-source software

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Sook Jung and others
Database, Volume 2025, 2025, baaf005, https://doi.org/10.1093/database/baaf005
Published: 12 February 2025
Journal Article

LitSumm: large language models for literature summarization of noncoding RNAs

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Andrew Green and others
Database, Volume 2025, 2025, baaf006, https://doi.org/10.1093/database/baaf006
Published: 05 February 2025
Journal Article

Helping authors produce FAIR taxonomic data: evaluation of an author-driven phenotype data production prototype

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Limin Zhang and others
Database, Volume 2025, 2025, baae097, https://doi.org/10.1093/database/baae097
Published: 29 January 2025
Journal Article

The TOXIN knowledge graph: supporting animal-free risk assessment of cosmetics

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Sara Sepehri and others
Database, Volume 2025, 2025, baae121, https://doi.org/10.1093/database/baae121
Published: 28 January 2025
Journal Article

BuffExDb: web-based tissue-specific gene expression resource for breeding and conservation programmes in Bubalus bubalis

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Naina Kumari and others
Database, Volume 2025, 2025, baae128, https://doi.org/10.1093/database/baae128
Published: 24 January 2025
Journal Article

A change language for ontologies and knowledge graphs

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Harshad Hegde and others
Database, Volume 2025, 2025, baae133, https://doi.org/10.1093/database/baae133
Published: 22 January 2025
Journal Article

Standardized pipelines support and facilitate integration of diverse datasets at the Rat Genome Database

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Jennifer R Smith and others
Database, Volume 2025, 2025, baae132, https://doi.org/10.1093/database/baae132
Published: 22 January 2025
Journal Article

LSD600: the first corpus of biomedical abstracts annotated with lifestyle–disease relations

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Esmaeil Nourani and others
Database, Volume 2025, 2025, baae129, https://doi.org/10.1093/database/baae129
Published: 17 January 2025
Journal Article

DisGeNet: a disease-centric interaction database among diseases and various associated genes

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Yaxuan Hu and others
Database, Volume 2025, 2025, baae122, https://doi.org/10.1093/database/baae122
Published: 11 January 2025
Journal Article

HoloFood Data Portal: holo-omic datasets for analysing host–microbiota interactions in animal production

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Alexander B Rogers and others
Database, Volume 2025, 2025, baae112, https://doi.org/10.1093/database/baae112
Published: 11 January 2025
Journal Article

AneRBC dataset: a benchmark dataset for computer-aided anemia diagnosis using RBC images

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Muhammad Shahzad and others
Database, Volume 2024, 2024, baae120, https://doi.org/10.1093/database/baae120
Published: 25 December 2024
Journal Article

JTIS: enhancing biomedical document-level relation extraction through joint training with intermediate steps

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Jiru Li and others
Database, Volume 2024, 2024, baae125, https://doi.org/10.1093/database/baae125
Published: 19 December 2024