Issue navigation
Volume 2023, 2023
Chemical identification and indexing in full-text articles: an overview of the NLM-Chem track at BioCreative VII
Robert Leaman and others
Database, Volume 2023, 2023, baad005, https://doi.org/10.1093/database/baad005
FungiProteomeDB: a database for the molecular weight and isoelectric points of the fungal proteomes
Muhammad Rashid and others
Database, Volume 2023, 2023, baad004, https://doi.org/10.1093/database/baad004
Assessing the use of supplementary materials to improve genomic variant discovery
Emilie Pasche and others
Database, Volume 2023, 2023, baad017, https://doi.org/10.1093/database/baad017
Improved insights into the SABIO-RK database via visualization
Dorotea Dudaš and others
Database, Volume 2023, 2023, baad011, https://doi.org/10.1093/database/baad011
PurificationDB: database of purification conditions for proteins
Olivia Garland and others
Database, Volume 2023, 2023, baad016, https://doi.org/10.1093/database/baad016
PDC: a highly compact file format to store protein 3D coordinates
Chengxin Zhang and Anna Marie Pyle
Database, Volume 2023, 2023, baad018, https://doi.org/10.1093/database/baad018
The landscape of health disparities in the UK Biobank
Shashwat Deepali Nagar and others
Database, Volume 2023, 2023, baad026, https://doi.org/10.1093/database/baad026
Semi-automatic translation of medicine usage data (in Dutch, free-text) from Lifelines COVID-19 questionnaires to ATC codes
Alexander J Kellmann and others
Database, Volume 2023, 2023, baad019, https://doi.org/10.1093/database/baad019
Integrated ACMG-approved genes and ICD codes for the translational research and precision medicine
Raghunandan Wable and others
Database, Volume 2023, 2023, baad033, https://doi.org/10.1093/database/baad033
scBrainMap: a landscape for cell types and associated genetic markers in the brain
Yuhao Chi and others
Database, Volume 2023, 2023, baad035, https://doi.org/10.1093/database/baad035
CenhANCER: a comprehensive cancer enhancer database for primary tissues and cell lines
Zhi-Hui Luo and others
Database, Volume 2023, 2023, baad022, https://doi.org/10.1093/database/baad022
Developing TeroENZ and TeroMAP modules for the terpenome research platform TeroKit
Nianhang Chen and others
Database, Volume 2023, 2023, baad020, https://doi.org/10.1093/database/baad020
ChagasDB: 80 years of publicly available data on the molecular host response to Trypanosoma cruzi infection in a single database
Pauline Brochet and others
Database, Volume 2023, 2023, baad037, https://doi.org/10.1093/database/baad037
CIGAF—a database and interactive platform for insect-associated trichomycete fungi
Shalini Chaudhary and others
Database, Volume 2023, 2023, baad038, https://doi.org/10.1093/database/baad038
RNA-Chrom: a manually curated analytical database of RNA–chromatin interactome
G K Ryabykh and others
Database, Volume 2023, 2023, baad025, https://doi.org/10.1093/database/baad025
BLAB2CancerKD: a knowledge graph database focusing on the association between lactic acid bacteria and cancer, but beyond
Yi Jing and others
Database, Volume 2023, 2023, baad036, https://doi.org/10.1093/database/baad036
Original Articles
Developing a disease-specific annotation protocol for VHL gene curation using Hypothes.is
Dena Salehipour and others
Database, Volume 2023, 2023, baac109, https://doi.org/10.1093/database/baac109
ENCD: a manually curated database of experimentally supported endocrine system disease and lncRNA associations
Ming Hao and others
Database, Volume 2023, 2023, baac113, https://doi.org/10.1093/database/baac113
Automatic Extraction of Medication Mentions from Tweets—Overview of the BioCreative VII Shared Task 3 Competition
Davy Weissenbacher and others
Database, Volume 2023, 2023, baac108, https://doi.org/10.1093/database/baac108
SalivaDB—a comprehensive database for salivary biomarkers in humans
Akanksha Arora and others
Database, Volume 2023, 2023, baad002, https://doi.org/10.1093/database/baad002
Coronavirus Immunotherapeutic Consortium Database
Jarjapu Mahita and others
Database, Volume 2023, 2023, baac112, https://doi.org/10.1093/database/baac112
Standardized naming of microbiome samples in Genomes OnLine Database
Supratim Mukherjee and others
Database, Volume 2023, 2023, baad001, https://doi.org/10.1093/database/baad001
Assessing resource use: a case study with the Human Disease Ontology
J. Allen Baron and Lynn M Schriml
Database, Volume 2023, 2023, baad007, https://doi.org/10.1093/database/baad007
AIMedGraph: a comprehensive multi-relational knowledge graph for precision medicine
Xueping Quan and others
Database, Volume 2023, 2023, baad006, https://doi.org/10.1093/database/baad006
lncHUB2: aggregated and inferred knowledge about human and mouse lncRNAs
Giacomo B Marino and others
Database, Volume 2023, 2023, baad009, https://doi.org/10.1093/database/baad009
dbAQP-SNP: a database of missense single-nucleotide polymorphisms in human aquaporins
Rachana Dande and Ramasubbu Sankararamakrishnan
Database, Volume 2023, 2023, baad012, https://doi.org/10.1093/database/baad012
AFTM: a database of transmembrane regions in the human proteome predicted by AlphaFold
Jimin Pei and Qian Cong
Database, Volume 2023, 2023, baad008, https://doi.org/10.1093/database/baad008
A review of the International Seabed Authority database DeepData from a biological perspective: challenges and opportunities in the UN Ocean Decade
M Rabone and others
Database, Volume 2023, 2023, baad013, https://doi.org/10.1093/database/baad013
NbThermo: a new thermostability database for nanobodies
Mario S Valdés-Tresanco and others
Database, Volume 2023, 2023, baad021, https://doi.org/10.1093/database/baad021
CARD*Shark: automated prioritization of literature curation for the Comprehensive Antibiotic Resistance Database
Arman Edalatmand and Andrew G McArthur
Database, Volume 2023, 2023, baad023, https://doi.org/10.1093/database/baad023
A combinatorial approach implementing new database structures to facilitate practical data curation management of QTL, association, correlation and heritability data on trait variants
Zhi-Liang Hu and others
Database, Volume 2023, 2023, baad024, https://doi.org/10.1093/database/baad024
MBS: a genome browser annotation track for high-confident microRNA binding sites in whole human transcriptome
Walter Arancio and others
Database, Volume 2023, 2023, baad015, https://doi.org/10.1093/database/baad015
OncoCardioDB: a public and curated database of molecular information in onco-cardiology/cardio-oncology
Angela L Riffo-Campos and others
Database, Volume 2023, 2023, baad029, https://doi.org/10.1093/database/baad029
TRSRD: a database for research on risky substances in tea using natural language processing and knowledge graph-based techniques
Yongmei Wang and others
Database, Volume 2023, 2023, baad031, https://doi.org/10.1093/database/baad031
CaviDB: a database of cavities and their features in the structural and conformational space of proteins
Ana Julia Velez Rueda and others
Database, Volume 2023, 2023, baad010, https://doi.org/10.1093/database/baad010
PYK-SubstitutionOME: an integrated database containing allosteric coupling, ligand affinity and mutational, structural, pathological, bioinformatic and computational information about pyruvate kinase isozymes
Liskin Swint-Kruse and others
Database, Volume 2023, 2023, baad030, https://doi.org/10.1093/database/baad030
SmartWoodID—an image collection of large end-grain surfaces to support wood identification systems
Ruben De Blaere and others
Database, Volume 2023, 2023, baad034, https://doi.org/10.1093/database/baad034
IHM-DB: a curated collection of metagenomics data from the Indian Himalayan Region, and automated pipeline for 16S rRNA amplicon-based analysis (AutoQii2)
Abhishek Khatri and others
Database, Volume 2023, 2023, baad039, https://doi.org/10.1093/database/baad039
PLBD: protein–ligand binding database of thermodynamic and kinetic intrinsic parameters
Darius Lingė and others
Database, Volume 2023, 2023, baad040, https://doi.org/10.1093/database/baad040
Review
New approaches in developing medicinal herbs databases
Zahra Fathifar and others
Database, Volume 2023, 2023, baac110, https://doi.org/10.1093/database/baac110
Review of databases for experimentally validated human microRNA–mRNA interactions
Dorian Kariuki and others
Database, Volume 2023, 2023, baad014, https://doi.org/10.1093/database/baad014
Technical report
WASP: the World Archives of Species Perception
Tuan Nguyen and others
Database, Volume 2023, 2023, baad003, https://doi.org/10.1093/database/baad003
Correction
Correction to: Standardized naming of microbiome samples in Genomes OnLine Database
Database, Volume 2023, 2023, baad032, https://doi.org/10.1093/database/baad032
Database tool
SyntenyViewer: a comparative genomics-driven translational research tool
Raphael Flores and others
Database, Volume 2023, 2023, baad027, https://doi.org/10.1093/database/baad027
MantaID: a machine learning–based tool to automate the identification of biological database IDs
Zhengpeng Zeng and others
Database, Volume 2023, 2023, baad028, https://doi.org/10.1093/database/baad028
Advertisement
Advertisement