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Volume 2025
2025
(In Progress)
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EISSN 1758-0463

Volume 2025, 2025

Original Articles

HoloFood Data Portal: holo-omic datasets for analysing host–microbiota interactions in animal production
Alexander B Rogers and others
Database, Volume 2025, 2025, baae112, https://doi.org/10.1093/database/baae112
DisGeNet: a disease-centric interaction database among diseases and various associated genes
Yaxuan Hu and others
Database, Volume 2025, 2025, baae122, https://doi.org/10.1093/database/baae122
LSD600: the first corpus of biomedical abstracts annotated with lifestyle–disease relations
Esmaeil Nourani and others
Database, Volume 2025, 2025, baae129, https://doi.org/10.1093/database/baae129
Standardized pipelines support and facilitate integration of diverse datasets at the Rat Genome Database
Jennifer R Smith and others
Database, Volume 2025, 2025, baae132, https://doi.org/10.1093/database/baae132
A change language for ontologies and knowledge graphs
Harshad Hegde and others
Database, Volume 2025, 2025, baae133, https://doi.org/10.1093/database/baae133
BuffExDb: web-based tissue-specific gene expression resource for breeding and conservation programmes in Bubalus bubalis
Naina Kumari and others
Database, Volume 2025, 2025, baae128, https://doi.org/10.1093/database/baae128
Helping authors produce FAIR taxonomic data: evaluation of an author-driven phenotype data production prototype
Limin Zhang and others
Database, Volume 2025, 2025, baae097, https://doi.org/10.1093/database/baae097
The TOXIN knowledge graph: supporting animal-free risk assessment of cosmetics
Sara Sepehri and others
Database, Volume 2025, 2025, baae121, https://doi.org/10.1093/database/baae121
LitSumm: large language models for literature summarization of noncoding RNAs
Andrew Green and others
Database, Volume 2025, 2025, baaf006, https://doi.org/10.1093/database/baaf006
Building resource-efficient community databases using open-source software
Sook Jung and others
Database, Volume 2025, 2025, baaf005, https://doi.org/10.1093/database/baaf005
TumorAgDB1.0: tumor neoantigen database platform
Yan Shao and others
Database, Volume 2025, 2025, baaf010, https://doi.org/10.1093/database/baaf010
Assessing the performance of generative artificial intelligence in retrieving information against manually curated genetic and genomic data
Elly Poretsky and others
Database, Volume 2025, 2025, baaf011, https://doi.org/10.1093/database/baaf011
Integrating AI-powered text mining from PubTator into the manual curation workflow at the Comparative Toxicogenomics Database
Thomas C Wiegers and others
Database, Volume 2025, 2025, baaf013, https://doi.org/10.1093/database/baaf013
MANUDB: database and application to retrieve and visualize mammalian NUMTs
Bálint Biró and others
Database, Volume 2025, 2025, baaf009, https://doi.org/10.1093/database/baaf009
PotatoBSLnc: a curated repository of potato long noncoding RNAs in response to biotic stress
Pingping Huang and others
Database, Volume 2025, 2025, baaf015, https://doi.org/10.1093/database/baaf015
gymnotoa-db: a database and application to optimize functional annotation in gymnosperms
Fernando Mora-Márquez and others
Database, Volume 2025, 2025, baaf019, https://doi.org/10.1093/database/baaf019

Database tool

BbGSD: Black-boned Sheep Genome SNP Database
Chunjuan He and others
Database, Volume 2025, 2025, baaf004, https://doi.org/10.1093/database/baaf004
LICEDB: light industrial core enzyme database for industrial applications and AI enzyme design
Lei Gong and others
Database, Volume 2025, 2025, baaf001, https://doi.org/10.1093/database/baaf001
AnnCovDB: a manually curated annotation database for mutations in SARS-CoV-2 spike protein
Xiaomin Zhang and others
Database, Volume 2025, 2025, baaf002, https://doi.org/10.1093/database/baaf002
TcEVdb: a database for T-cell-derived small extracellular vesicles from single-cell transcriptomes
Tao Luo and others
Database, Volume 2025, 2025, baaf012, https://doi.org/10.1093/database/baaf012
ForestForward: visualizing and accessing integrated world forest data from the last 50 years
E. L Tejada-Gutiérrez and others
Database, Volume 2025, 2025, baaf018, https://doi.org/10.1093/database/baaf018
Pipeline to explore information on genome editing using large language models and genome editing meta-database
Takayuki Suzuki and Hidemasa Bono
Database, Volume 2025, 2025, baaf022, https://doi.org/10.1093/database/baaf022
VarGuideAtlas: a repository of variant interpretation guidelines
Mireia Costa and others
Database, Volume 2025, 2025, baaf017, https://doi.org/10.1093/database/baaf017

Expression of concern

Expression of Concern: DisGeNet: a disease-centric interaction database among diseases and various associated genes
Database, Volume 2025, 2025, baaf007, https://doi.org/10.1093/database/baaf007

Perspective/Opinion

Working in biocuration: contemporary experiences and perspectives
Sarah R Davies
Database, Volume 2025, 2025, baaf003, https://doi.org/10.1093/database/baaf003

Correction

Correction to: The landscape of microRNA interaction annotation: analysis of three rare disorders as a case study
Database, Volume 2025, 2025, baae131, https://doi.org/10.1093/database/baae131
Correction to: CardioHotspots: a database of mutational hotspots for cardiac disorders
Database, Volume 2025, 2025, baaf014, https://doi.org/10.1093/database/baaf014
All issues
  • Online ISSN 1758-0463
  • Copyright © 2025 Oxford University Press

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