Volume 2021, 2021
Automatization and self-maintenance of the O-GlcNAcome catalog: a smart scientific database
Database, Volume 2021, 2021, baab039, https://doi.org/10.1093/database/baab039
Web tools to perform long non-coding RNAs analysis in oncology research
Database, Volume 2021, 2021, baab047, https://doi.org/10.1093/database/baab047
circExp database: an online transcriptome platform for human circRNA expressions in cancers
Database, Volume 2021, 2021, baab045, https://doi.org/10.1093/database/baab045
A nomenclature for echinoderm genes
Database, Volume 2021, 2021, baab052, https://doi.org/10.1093/database/baab052
Nabe: an energetic database of amino acid mutations in protein–nucleic acid binding interfaces
Database, Volume 2021, 2021, baab050, https://doi.org/10.1093/database/baab050
A PostgreSQL Tripal solution for large-scale genotypic and phenotypic data
Database, Volume 2021, 2021, baab051, https://doi.org/10.1093/database/baab051
HBFP: a new repository for human body fluid proteome
Database, Volume 2021, 2021, baab065, https://doi.org/10.1093/database/baab065
OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies
Database, Volume 2021, 2021, baab069, https://doi.org/10.1093/database/baab069
Prototheca-ID: a web-based application for molecular identification of Prototheca species
Database, Volume 2021, 2021, baab073, https://doi.org/10.1093/database/baab073
DCMP: database of cancer mutant protein domains
Database, Volume 2021, 2021, baab066, https://doi.org/10.1093/database/baab066
Corrigendum to: the SNPcurator: literature mining of enriched SNP-disease associations
Database, Volume 2021, 2021, baab070, https://doi.org/10.1093/database/baab070
Corrigendum to: QSDB—a graphical Quorum Sensing Database
Database, Volume 2021, 2021, baab071, https://doi.org/10.1093/database/baab071
iCAV: an integrative database of cancer-associated viruses
Database, Volume 2021, 2021, baab079, https://doi.org/10.1093/database/baab079
https://www.fungiofpakistan.com: a continuously updated online database of fungi in Pakistan
Database, Volume 2021, 2021, baab080, https://doi.org/10.1093/database/baab080
The first comprehensive database of germline pathogenic variants in East Asian cancer patients
Database, Volume 2021, 2021, baab075, https://doi.org/10.1093/database/baab075
Original Articles
HGFDB: a collective database of helmeted guinea fowl genomics
Database, Volume 2021, 2021, baaa116, https://doi.org/10.1093/database/baaa116
Large-scale regulatory and signaling network assembly through linked open data
Database, Volume 2021, 2021, baaa113, https://doi.org/10.1093/database/baaa113
Extraction of causal relations based on SBEL and BERT model
Database, Volume 2021, 2021, baab005, https://doi.org/10.1093/database/baab005
Curation of over 10 000 transcriptomic studies to enable data reuse
Database, Volume 2021, 2021, baab006, https://doi.org/10.1093/database/baab006
CMBD: a manually curated cancer metabolic biomarker knowledge database
Database, Volume 2021, 2021, baaa094, https://doi.org/10.1093/database/baaa094
An immunologically friendly classification of non-peptidic ligands
Database, Volume 2021, 2021, baab014, https://doi.org/10.1093/database/baab014
APICURON: a database to credit and acknowledge the work of biocurators
Database, Volume 2021, 2021, baab019, https://doi.org/10.1093/database/baab019
Tripal MegaSearch: a tool for interactive and customizable query and download of big data
Database, Volume 2021, 2021, baab023, https://doi.org/10.1093/database/baab023
CANNUSE, a database of traditional Cannabis uses—an opportunity for new research
Database, Volume 2021, 2021, baab024, https://doi.org/10.1093/database/baab024
Human IRES Atlas: an integrative platform for studying IRES-driven translational regulation in humans
Database, Volume 2021, 2021, baab025, https://doi.org/10.1093/database/baab025
COVIDOUTCOME—estimating COVID severity based on mutation signatures in the SARS-CoV-2 genome
Database, Volume 2021, 2021, baab020, https://doi.org/10.1093/database/baab020
covid19census: U.S. and Italy COVID-19 metrics and other epidemiological data
Database, Volume 2021, 2021, baab027, https://doi.org/10.1093/database/baab027
emiRIT: a text-mining-based resource for microRNA information
Database, Volume 2021, 2021, baab031, https://doi.org/10.1093/database/baab031
BENviewer: a gene interaction network visualization server based on graph embedding model
Database, Volume 2021, 2021, baab033, https://doi.org/10.1093/database/baab033
dbGENVOC: database of GENomic Variants of Oral Cancer, with special reference to India
Database, Volume 2021, 2021, baab034, https://doi.org/10.1093/database/baab034
TIDB: a comprehensive database of trained immunity
Database, Volume 2021, 2021, baab041, https://doi.org/10.1093/database/baab041
MUSTARD—a comprehensive resource of mutation-specific therapies in cancer
Database, Volume 2021, 2021, baab042, https://doi.org/10.1093/database/baab042
Male Infertility Knowledgebase: decoding the genetic and disease landscape
Database, Volume 2021, 2021, baab049, https://doi.org/10.1093/database/baab049
The Breeding Information Management System (BIMS): an online resource for crop breeding
Database, Volume 2021, 2021, baab054, https://doi.org/10.1093/database/baab054
MODB: a comprehensive mitochondrial genome database for Mollusca
Database, Volume 2021, 2021, baab056, https://doi.org/10.1093/database/baab056
QSDB—a graphical Quorum Sensing Database
Database, Volume 2021, 2021, baab058, https://doi.org/10.1093/database/baab058
COVIDium: a COVID-19 resource compendium
Database, Volume 2021, 2021, baab057, https://doi.org/10.1093/database/baab057
Classifying domain-specific text documents containing ambiguous keywords
Database, Volume 2021, 2021, baab062, https://doi.org/10.1093/database/baab062
Review
Post-translational modifications in proteins: resources, tools and prediction methods
Database, Volume 2021, 2021, baab012, https://doi.org/10.1093/database/baab012
An overview of graph databases and their applications in the biomedical domain
Database, Volume 2021, 2021, baab026, https://doi.org/10.1093/database/baab026
Database tool
InSexBase: an annotated genomic resource of sex chromosomes and sex-biased genes in insects
Database, Volume 2021, 2021, baab001, https://doi.org/10.1093/database/baab001
CausalBuilder: bringing the MI2CAST causal interaction annotation standard to the curator
Database, Volume 2021, 2021, baaa107, https://doi.org/10.1093/database/baaa107
MENSAdb: a thorough structural analysis of membrane protein dimers
Database, Volume 2021, 2021, baab013, https://doi.org/10.1093/database/baab013
H3ABioNet genomic medicine and microbiome data portals hackathon proceedings
Database, Volume 2021, 2021, baab016, https://doi.org/10.1093/database/baab016
BC-TFdb: a database of transcription factor drivers in breast cancer
Database, Volume 2021, 2021, baab018, https://doi.org/10.1093/database/baab018
IBDDB: a manually curated and text-mining-enhanced database of genes involved in inflammatory bowel disease
Database, Volume 2021, 2021, baab022, https://doi.org/10.1093/database/baab022
mPPI: a database extension to visualize structural interactome in a one-to-many manner
Database, Volume 2021, 2021, baab036, https://doi.org/10.1093/database/baab036
LINPS: a database for cancer-cell-specific perturbations of biological networks
Database, Volume 2021, 2021, baab048, https://doi.org/10.1093/database/baab048
Database update
SinEx DB 2.0 update 2020: database for eukaryotic single-exon coding sequences
Database, Volume 2021, 2021, baab002, https://doi.org/10.1093/database/baab002
An update of KAIKObase, the silkworm genome database
Database, Volume 2021, 2021, baaa099, https://doi.org/10.1093/database/baaa099
Integration of 1:1 orthology maps and updated datasets into Echinobase
Database, Volume 2021, 2021, baab030, https://doi.org/10.1093/database/baab030
The Progenetix oncogenomic resource in 2021
Database, Volume 2021, 2021, baab043, https://doi.org/10.1093/database/baab043
Technical report
Bioinformatics tools developed to support BioCompute Objects
Database, Volume 2021, 2021, baab008, https://doi.org/10.1093/database/baab008
Standardization of assay representation in the Ontology for Biomedical Investigations
Database, Volume 2021, 2021, baab040, https://doi.org/10.1093/database/baab040
