Volume 2018

2018

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EISSN 1758-0463

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Volume 2018, 2018

Original Article

ConTEdb: a comprehensive database of transposable elements in conifers

Fei Yi and others

Database, Volume 2018, 2018, bay131, https://doi.org/10.1093/database/bay131

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Foundry: a message-oriented, horizontally scalable ETL system for scientific data integration and enhancement

Ibrahim Burak Ozyurt and Jeffrey S Grethe

Database, Volume 2018, 2018, bay130, https://doi.org/10.1093/database/bay130

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Accelerating annotation of articles via automated approaches: evaluation of the neXtA₅ curation-support tool by neXtProt

Aurore Britan and others

Database, Volume 2018, 2018, bay129, https://doi.org/10.1093/database/bay129

iTextMine: integrated text-mining system for large-scale knowledge extraction from the literature

Jia Ren and others

Database, Volume 2018, 2018, bay128, https://doi.org/10.1093/database/bay128

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Where differences resemble: sequence-feature analysis in curated databases of intrinsically disordered proteins

Marco Necci and others

Database, Volume 2018, 2018, bay127, https://doi.org/10.1093/database/bay127

BEL Commons: an environment for exploration and analysis of networks encoded in Biological Expression Language

Charles Tapley Hoyt and others

Database, Volume 2018, 2018, bay126, https://doi.org/10.1093/database/bay126

PhytoTypeDB: a database of plant protein inter-cultivar variability and function

Marco Necci and others

Database, Volume 2018, 2018, bay125, https://doi.org/10.1093/database/bay125

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Cloud-based relational database for multimodal animal data

Niklas Pallast and others

Database, Volume 2018, 2018, bay124, https://doi.org/10.1093/database/bay124

NBDC RDF portal: a comprehensive repository for semantic data in life sciences

Shuichi Kawashima and others

Database, Volume 2018, 2018, bay123, https://doi.org/10.1093/database/bay123

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BioCreative VI Precision Medicine Track system performance is constrained by entity recognition and variations in corpus characteristics

Qingyu Chen and others

Database, Volume 2018, 2018, bay122, https://doi.org/10.1093/database/bay122

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Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems

Wasila Dahdul and others

Database, Volume 2018, 2018, bay110, https://doi.org/10.1093/database/bay110

ANCO-GeneDB: annotations and comprehensive analysis of candidate genes for alcohol, nicotine, cocaine and opioid dependence

Ruifeng Hu and others

Database, Volume 2018, 2018, bay121, https://doi.org/10.1093/database/bay121

Potent pairing: ensemble of long short-term memory networks and support vector machine for chemical-protein relation extraction

Farrokh Mehryary and others

Database, Volume 2018, 2018, bay120, https://doi.org/10.1093/database/bay120

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RTPDB: a database providing associations between genetic variation or expression and cancer prognosis with radiotherapy-based treatment

Cheng-Dong Zhang and others

Database, Volume 2018, 2018, bay118, https://doi.org/10.1093/database/bay118

GCDB: a glaucomatous chemogenomics database for in silico drug discovery

Yu Wei and others

Database, Volume 2018, 2018, bay117, https://doi.org/10.1093/database/bay117

Gene ontology concept recognition using named concept: understanding the various presentations of the gene functions in biomedical literature

Chia-Jung Yang and Jung-Hsien Chiang

Database, Volume 2018, 2018, bay115, https://doi.org/10.1093/database/bay115

LPTK: a linguistic pattern-aware dependency tree kernel approach for the BioCreative VI CHEMPROT task

Neha Warikoo and others

Database, Volume 2018, 2018, bay108, https://doi.org/10.1093/database/bay108

MGH: a genome hub for the medicinal plant maca (Lepidium meyenii)

Junhao Chen and others

Database, Volume 2018, 2018, bay113, https://doi.org/10.1093/database/bay113

ZFLNC: a comprehensive and well-annotated database for zebrafish lncRNA

Xiang Hu and others

Database, Volume 2018, 2018, bay114, https://doi.org/10.1093/database/bay114

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Overview of the BioCreative VI text-mining services for Kinome Curation Track

Julien Gobeill and others

Database, Volume 2018, 2018, bay104, https://doi.org/10.1093/database/bay104

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siAbasic: a comprehensive database for potent siRNA-6Ø sequences without off-target effects

Jongyeun Park and others

Database, Volume 2018, 2018, bay109, https://doi.org/10.1093/database/bay109

Toward a service-based workflow for automated information extraction from herbarium specimens

Agnes Kirchhoff and others

Database, Volume 2018, 2018, bay103, https://doi.org/10.1093/database/bay103

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Extracting chemical–protein relations using attention-based neural networks

Sijia Liu and others

Database, Volume 2018, 2018, bay102, https://doi.org/10.1093/database/bay102

AGD: Aneurysm Gene Database

Ruya Sun and others

Database, Volume 2018, 2018, bay100, https://doi.org/10.1093/database/bay100

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Large-scale automated machine reading discovers new cancer-driving mechanisms

Marco A Valenzuela-Escárcega and others

Database, Volume 2018, 2018, bay098, https://doi.org/10.1093/database/bay098

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Document triage for identifying protein–protein interactions affected by mutations: a neural network ensemble approach

Ling Luo and others

Database, Volume 2018, 2018, bay097, https://doi.org/10.1093/database/bay097

Wide-scope biomedical named entity recognition and normalization with CRFs, fuzzy matching and character level modeling

Suwisa Kaewphan and others

Database, Volume 2018, 2018, bay096, https://doi.org/10.1093/database/bay096

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PalmXplore: oil palm gene database

Nik Shazana Nik Mohd Sanusi and others

Database, Volume 2018, 2018, bay095, https://doi.org/10.1093/database/bay095

An end-to-end deep learning architecture for extracting protein–protein interactions affected by genetic mutations

Tung Tran and Ramakanth Kavuluru

Database, Volume 2018, 2018, Pages 1–13, https://doi.org/10.1093/database/bay092

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Assisting document triage for human kinome curation via machine learning

Yi-Yu Hsu and others

Database, Volume 2018, 2018, bay091, https://doi.org/10.1093/database/bay091

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THE-DB: a threading model database for comparative protein structure analysis of the E. coli K12 and human proteomes

Justin S Diamond and Yang Zhang

Database, Volume 2018, 2018, bay090, https://doi.org/10.1093/database/bay090

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AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture

Lisa Harper and others

Database, Volume 2018, 2018, bay088, https://doi.org/10.1093/database/bay088

lncSLdb: a resource for long non-coding RNA subcellular localization

Xiao Wen and others

Database, Volume 2018, 2018, bay085, https://doi.org/10.1093/database/bay085

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Drug Target Commons 2.0: a community platform for systematic analysis of drug–target interaction profiles

ZiaurRehman Tanoli and others

Database, Volume 2018, 2018, bay083, https://doi.org/10.1093/database/bay083

SMMDB: a web-accessible database for small molecule modulators and their targets involved in neurological diseases

Subodh Kumar Mishra and others

Database, Volume 2018, 2018, bay082, https://doi.org/10.1093/database/bay082

PlaNC-TE: a comprehensive knowledgebase of non-coding RNAs and transposable elements in plants

Daniel Longhi Fernandes Pedro and others

Database, Volume 2018, 2018, bay078, https://doi.org/10.1093/database/bay078

A probabilistic automated tagger to identify human-related publications

Aaron M Cohen and others

Database, Volume 2018, 2018, bay079, https://doi.org/10.1093/database/bay079

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Spfy: an integrated graph database for real-time prediction of bacterial phenotypes and downstream comparative analyses

Kevin K Le and others

Database, Volume 2018, 2018, bay086, https://doi.org/10.1093/database/bay086

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MetaHCR: a web-enabled metagenome data management system for hydrocarbon resources

Peter C Marks and others

Database, Volume 2018, 2018, bay087, https://doi.org/10.1093/database/bay087

Hierarchical bi-directional attention-based RNNs for supporting document classification on protein–protein interactions affected by genetic mutations

Aris Fergadis and others

Database, Volume 2018, 2018, bay076, https://doi.org/10.1093/database/bay076

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Extracting chemical–protein relations with ensembles of SVM and deep learning models

Yifan Peng and others

Database, Volume 2018, 2018, bay073, https://doi.org/10.1093/database/bay073

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realDB: a genome and transcriptome resource for the red algae (phylum Rhodophyta)

Fei Chen and others

Database, Volume 2018, 2018, bay072, https://doi.org/10.1093/database/bay072

Leveraging prior knowledge for protein–protein interaction extraction with memory network

Huiwei Zhou and others

Database, Volume 2018, 2018, bay071, https://doi.org/10.1093/database/bay071

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Improving the learning of chemical-protein interactions from literature using transfer learning and specialized word embeddings

P Corbett and J Boyle

Database, Volume 2018, 2018, bay066, https://doi.org/10.1093/database/bay066

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A Field Sensor: computing the composition and intent of PubMed queries

Lana Yeganova and others

Database, Volume 2018, 2018, bay052, https://doi.org/10.1093/database/bay052

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HRPDviewer: human ribosome profiling data viewer

Wei-Sheng Wu and others

Database, Volume 2018, 2018, bay074, https://doi.org/10.1093/database/bay074

A set of domain rules and a deep network for protein coreference resolution

Chen Li and others

Database, Volume 2018, 2018, bay065, https://doi.org/10.1093/database/bay065

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CeleryDB: a genomic database for celery

Kai Feng and others

Database, Volume 2018, 2018, bay070, https://doi.org/10.1093/database/bay070

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KM-express: an integrated online patient survival and gene expression analysis tool for the identification and functional characterization of prognostic markers in breast and prostate cancers

Xin Chen and others

Database, Volume 2018, 2018, bay069, https://doi.org/10.1093/database/bay069

Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes

Elton J R Vasconcelos and others

Database, Volume 2018, 2018, bay068, https://doi.org/10.1093/database/bay068

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Identifying frequent patterns in biochemical reaction networks: a workflow

Fabienne Lambusch and others

Database, Volume 2018, 2018, bay051, https://doi.org/10.1093/database/bay051

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A database of wild rice germplasm of Oryza rufipogon species complex from different agro-climatic zones of India

Kabita Tripathy and others

Database, Volume 2018, 2018, bay058, https://doi.org/10.1093/database/bay058

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Improved biomedical term selection in pseudo relevance feedback

Muhammad Nabeel Asim and others

Database, Volume 2018, 2018, bay056, https://doi.org/10.1093/database/bay056

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dbLGL: an online leukemia gene and literature database for the retrospective comparison of adult and childhood leukemia genetics with literature evidence

Yining Liu and others

Database, Volume 2018, 2018, bay062, https://doi.org/10.1093/database/bay062

Chemical–gene relation extraction using recursive neural network

Sangrak Lim and Jaewoo Kang

Database, Volume 2018, 2018, bay060, https://doi.org/10.1093/database/bay060

RBPMetaDB: a comprehensive annotation of mouse RNA-Seq datasets with perturbations of RNA-binding proteins

Jin Li and others

Database, Volume 2018, 2018, bay054, https://doi.org/10.1093/database/bay054

ILDgenDB: integrated genetic knowledge resource for interstitial lung diseases (ILDs)

Smriti Mishra and others

Database, Volume 2018, 2018, bay053, https://doi.org/10.1093/database/bay053

A systematic approach for identifying shared mechanisms in epilepsy and its comorbidities

Charles Tapley Hoyt and others

Database, Volume 2018, 2018, bay050, https://doi.org/10.1093/database/bay050

SPRENO: a BioC module for identifying organism terms in figure captions

Hong-Jie Dai and Onkar Singh

Database, Volume 2018, 2018, bay048, https://doi.org/10.1093/database/bay048

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dbCRSR: a manually curated database for regulation of cancer radiosensitivity

Pengbo Wen and others

Database, Volume 2018, 2018, bay049, https://doi.org/10.1093/database/bay049

DEXTER: Disease-Expression Relation Extraction from Text

Samir Gupta and others

Database, Volume 2018, 2018, bay045, https://doi.org/10.1093/database/bay045

SolCyc: a database hub at the Sol Genomics Network (SGN) for the manual curation of metabolic networks in Solanum and Nicotiana specific databases

Hartmut Foerster and others

Database, Volume 2018, 2018, bay035, https://doi.org/10.1093/database/bay035

CircR2Disease: a manually curated database for experimentally supported circular RNAs associated with various diseases

Chunyan Fan and others

Database, Volume 2018, 2018, bay044, https://doi.org/10.1093/database/bay044

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GEMiCCL: mining genotype and expression data of cancer cell lines with elaborate visualization

Inhae Jeong and others

Database, Volume 2018, 2018, bay041, https://doi.org/10.1093/database/bay041

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AbDb: antibody structure database—a database of PDB-derived antibody structures

Saba Ferdous and Andrew C R Martin

Database, Volume 2018, 2018, bay040, https://doi.org/10.1093/database/bay040

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PVCbase: an integrated web resource for the PVC bacterial proteomes

Nicola Bordin and others

Database, Volume 2018, 2018, bay042, https://doi.org/10.1093/database/bay042

StraPep: a structure database of bioactive peptides

Jian Wang and others

Database, Volume 2018, 2018, bay038, https://doi.org/10.1093/database/bay038

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Signalling maps in cancer research: construction and data analysis

Maria Kondratova and others

Database, Volume 2018, 2018, bay036, https://doi.org/10.1093/database/bay036

An entropy-reducing data representation approach for bioinformatic data

Alan F McCulloch and others

Database, Volume 2018, 2018, bay029, https://doi.org/10.1093/database/bay029

Expert curation for building network-based dynamical models: a case study on atherosclerotic plaque formation

Amel Bekkar and others

Database, Volume 2018, 2018, bay031, https://doi.org/10.1093/database/bay031

A tutorial of diverse genome analysis tools found in the CoGe web-platform using Plasmodium spp. as a model

Andreina I Castillo and others

Database, Volume 2018, 2018, bay030, https://doi.org/10.1093/database/bay030

dbAMEPNI: a database of alanine mutagenic effects for protein–nucleic acid interactions

Ling Liu and others

Database, Volume 2018, 2018, bay034, https://doi.org/10.1093/database/bay034

Probabilistic and machine learning-based retrieval approaches for biomedical dataset retrieval

Payam Karisani and others

Database, Volume 2018, 2018, bax104, https://doi.org/10.1093/database/bax104

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Improved ontology-based similarity calculations using a study-wise annotation model

Sebastian Köhler

Database, Volume 2018, 2018, bay026, https://doi.org/10.1093/database/bay026

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GEOMetaCuration: a web-based application for accurate manual curation of Gene Expression Omnibus metadata

Zhao Li and others

Database, Volume 2018, 2018, bay019, https://doi.org/10.1093/database/bay019

CITGeneDB: a comprehensive database of human and mouse genes enhancing or suppressing cold-induced thermogenesis validated by perturbation experiments in mice

Jin Li and others

Database, Volume 2018, 2018, bay012, https://doi.org/10.1093/database/bay012

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Finding relevant biomedical datasets: the UC San Diego solution for the bioCADDIE Retrieval Challenge

Wei Wei and others

Database, Volume 2018, 2018, bay017, https://doi.org/10.1093/database/bay017

PvaxDB: a comprehensive structural repository of Plasmodium vivax proteome

Ankita Singh and others

Database, Volume 2018, 2018, bay021, https://doi.org/10.1093/database/bay021

Baseline and extensions approach to information retrieval of complex medical data: Poznan's approach to the bioCADDIE 2016

Artur Cieslewicz and others

Database, Volume 2018, 2018, bax103, https://doi.org/10.1093/database/bax103

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SPTEdb: a database for transposable elements in salicaceous plants

Fei Yi and others

Database, Volume 2018, 2018, bay024, https://doi.org/10.1093/database/bay024

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YummyData: providing high-quality open life science data

Yasunori Yamamoto and others

Database, Volume 2018, 2018, bay022, https://doi.org/10.1093/database/bay022

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The SNPcurator: literature mining of enriched SNP-disease associations

Noha S Tawfik and Marco R Spruit

Database, Volume 2018, 2018, bay020, https://doi.org/10.1093/database/bay020

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NDDVD: an integrated and manually curated Neurodegenerative Diseases Variation Database

Yang Yang and others

Database, Volume 2018, 2018, bay018, https://doi.org/10.1093/database/bay018

Micropublication: incentivizing community curation and placing unpublished data into the public domain

Daniela Raciti and others

Database, Volume 2018, 2018, bay013, https://doi.org/10.1093/database/bay013

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miRwayDB: a database for experimentally validated microRNA-pathway associations in pathophysiological conditions

Sankha Subhra Das and others

Database, Volume 2018, 2018, bay023, https://doi.org/10.1093/database/bay023

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Prevention of data duplication for high throughput sequencing repositories

Idan Gabdank and others

Database, Volume 2018, 2018, bay008, https://doi.org/10.1093/database/bay008

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TransAtlasDB: an integrated database connecting expression data, metadata and variants

Modupeore O Adetunji and others

Database, Volume 2018, 2018, bay014, https://doi.org/10.1093/database/bay014

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The NCBI BioCollections Database

Shobha Sharma and others

Database, Volume 2018, 2018, bay006, https://doi.org/10.1093/database/bay006

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AllerGAtlas 1.0: a human allergy-related genes database

Jinying Liu and others

Database, Volume 2018, 2018, bay010, https://doi.org/10.1093/database/bay010

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Identification of errors in the IEDB using ontologies

Randi Vita and others

Database, Volume 2018, 2018, bay005, https://doi.org/10.1093/database/bay005

FAIR principles and the IEDB: short-term improvements and a long-term vision of OBO-foundry mediated machine-actionable interoperability

Randi Vita and others

Database, Volume 2018, 2018, bax105, https://doi.org/10.1093/database/bax105

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Fungal Stress Database (FSD)––a repository of fungal stress physiological data

Erzsébet Orosz and others

Database, Volume 2018, 2018, bay009, https://doi.org/10.1093/database/bay009

OliveNet™: a comprehensive library of compounds from Olea europaea

Natalie P Bonvino and others

Database, Volume 2018, 2018, bay016, https://doi.org/10.1093/database/bay016

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Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data

Jasmine Y Young and others

Database, Volume 2018, 2018, bay002, https://doi.org/10.1093/database/bay002

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FishTEDB: a collective database of transposable elements identified in the complete genomes of fish

Feng Shao and others

Database, Volume 2018, 2018, bax106, https://doi.org/10.1093/database/bax106

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A generic workflow for effective sampling of environmental vouchers with UUID assignment and image processing

Dagmar Triebel and others

Database, Volume 2018, 2018, bax096, https://doi.org/10.1093/database/bax096

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YAAM: Yeast Amino Acid Modifications Database

Leonardo Ledesma and others

Database, Volume 2018, 2018, bax099, https://doi.org/10.1093/database/bax099

Database Update

Ensembl variation resources

Sarah E Hunt and others

Database, Volume 2018, 2018, bay119, https://doi.org/10.1093/database/bay119

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Medicinal Materials DNA Barcode Database (MMDBD) version 1.5—one-stop solution for storage, BLAST, alignment and primer design

Tin-Hang Wong and others

Database, Volume 2018, 2018, bay112, https://doi.org/10.1093/database/bay112

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AutismKB 2.0: a knowledgebase for the genetic evidence of autism spectrum disorder

Changhong Yang and others

Database, Volume 2018, 2018, bay106, https://doi.org/10.1093/database/bay106

Growing and cultivating the forest genomics database, TreeGenes

Taylor Falk and others

Database, Volume 2018, 2018, bay084, https://doi.org/10.1093/database/bay084

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ChemDIS 2: an update of chemical-disease inference system

Chun-Wei Tung and Shan-Shan Wang

Database, Volume 2018, 2018, bay077, https://doi.org/10.1093/database/bay077

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Biopanning data bank 2018: hugging next generation phage display

Bifang He and others

Database, Volume 2018, 2018, bay032, https://doi.org/10.1093/database/bay032

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Updated regulation curation model at the Saccharomyces Genome Database

Stacia R Engel and others

Database, Volume 2018, 2018, bay007, https://doi.org/10.1093/database/bay007

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dbDEPC 3.0: the database of differentially expressed proteins in human cancer with multi-level annotation and drug indication

Qingmin Yang and others

Database, Volume 2018, 2018, bay015, https://doi.org/10.1093/database/bay015

TISSUES 2.0: an integrative web resource on mammalian tissue expression

Oana Palasca and others

Database, Volume 2018, 2018, bay003, https://doi.org/10.1093/database/bay003

HTT-DB: new features and updates

Bruno Reis Dotto and others

Database, Volume 2018, 2018, bax102, https://doi.org/10.1093/database/bax102

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Database Tool

YHMI: a web tool to identify histone modifications and histone/chromatin regulators from a gene list in yeast

Wei-Sheng Wu and others

Database, Volume 2018, 2018, bay116, https://doi.org/10.1093/database/bay116

VianniaTopes: a database of predicted immunogenic peptides for Leishmania (Viannia) species

Alejandro Llanes and others

Database, Volume 2018, 2018, bay111, https://doi.org/10.1093/database/bay111

GFDP: the gene family database in poplar

Hao Wang and others

Database, Volume 2018, 2018, bay107, https://doi.org/10.1093/database/bay107

PVsiRNAdb: a database for plant exclusive virus-derived small interfering RNAs

Nikita Gupta and others

Database, Volume 2018, 2018, bay105, https://doi.org/10.1093/database/bay105

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Tripal Developer Toolkit

Bradford Condon and others

Database, Volume 2018, 2018, bay099, https://doi.org/10.1093/database/bay099

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PubMed Labs: an experimental system for improving biomedical literature search

Nicolas Fiorini and others

Database, Volume 2018, 2018, bay094, https://doi.org/10.1093/database/bay094

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ATD: a comprehensive bioinformatics resource for deciphering the association of autophagy and diseases

Wenjing Wang and others

Database, Volume 2018, 2018, bay093, https://doi.org/10.1093/database/bay093

WaspBase: a genomic resource for the interactions among parasitic wasps, insect hosts and plants

Longfei Chen and others

Database, Volume 2018, 2018, bay081, https://doi.org/10.1093/database/bay081

SAGE: a comprehensive resource of genetic variants integrating South Asian whole genomes and exomes

Judith Mary Hariprakash and others

Database, Volume 2018, 2018, bay080, https://doi.org/10.1093/database/bay080

HDncRNA: a comprehensive database of non-coding RNAs associated with heart diseases

Wen-Jing Wang and others

Database, Volume 2018, 2018, bay067, https://doi.org/10.1093/database/bay067

mutTCPdb: a comprehensive database for genomic variants of a tropical country neglected disease—tropical calcific pancreatitis

Garima Singh and others

Database, Volume 2018, 2018, bay043, https://doi.org/10.1093/database/bay043

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RabGTD: a comprehensive database of rabbit genome and transcriptome

Lu Zhou and others

Database, Volume 2018, 2018, bay075, https://doi.org/10.1093/database/bay075

SDADB: a functional annotation database of protein structural domains

Cheng Zeng and others

Database, Volume 2018, 2018, bay064, https://doi.org/10.1093/database/bay064

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IsopiRBank: a research resource for tracking piRNA isoforms

Huan Zhang and others

Database, Volume 2018, 2018, bay059, https://doi.org/10.1093/database/bay059

PtRFdb: a database for plant transfer RNA-derived fragments

Nikita Gupta and others

Database, Volume 2018, 2018, bay063, https://doi.org/10.1093/database/bay063

LncCeRBase: a database of experimentally validated human competing endogenous long non-coding RNAs

Cong Pian and others

Database, Volume 2018, 2018, bay061, https://doi.org/10.1093/database/bay061

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MPD: a pathogen genome and metagenome database

Tingting Zhang and others

Database, Volume 2018, 2018, bay055, https://doi.org/10.1093/database/bay055

LeptoDB: an integrated database of genomics and proteomics resource of Leptospira

Shruti Beriwal and others

Database, Volume 2018, 2018, bay057, https://doi.org/10.1093/database/bay057

A comparative synteny analysis tool for target-gene SNP marker discovery: connecting genomics data to breeding in Solanaceae

Junkyoung Choe and others

Database, Volume 2018, 2018, bay047, https://doi.org/10.1093/database/bay047

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CBD: a biomarker database for colorectal cancer

Xueli Zhang and others

Database, Volume 2018, 2018, bay046, https://doi.org/10.1093/database/bay046

LnChrom: a resource of experimentally validated lncRNA–chromatin interactions in human and mouse

Fulong Yu and others

Database, Volume 2018, 2018, bay039, https://doi.org/10.1093/database/bay039

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SNPversity: a web-based tool for visualizing diversity

David A Schott and others

Database, Volume 2018, 2018, bay037, https://doi.org/10.1093/database/bay037

Maser: one-stop platform for NGS big data from analysis to visualization

Sonoko Kinjo and others

Database, Volume 2018, 2018, bay027, https://doi.org/10.1093/database/bay027

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BioDataome: a collection of uniformly preprocessed and automatically annotated datasets for data-driven biology

Kleanthi Lakiotaki and others

Database, Volume 2018, 2018, bay011, https://doi.org/10.1093/database/bay011

AntiTbPdb: a knowledgebase of anti-tubercular peptides

Salman Sadullah Usmani and others

Database, Volume 2018, 2018, bay025, https://doi.org/10.1093/database/bay025

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GAN: a platform of genomics and genetics analysis and application in Nicotiana

Shuai Yang and others

Database, Volume 2018, 2018, bay001, https://doi.org/10.1093/database/bay001

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miRToolsGallery: a tag-based and rankable microRNA bioinformatics resources database portal

Liang Chen and others

Database, Volume 2018, 2018, bay004, https://doi.org/10.1093/database/bay004

CellExpress: a comprehensive microarray-based cancer cell line and clinical sample gene expression analysis online system

Yi-Fang Lee and others

Database, Volume 2018, 2018, bax101, https://doi.org/10.1093/database/bax101

Perspective/Opinion

Improved ontology for eukaryotic single-exon coding sequences in biological databases

Roddy Jorquera and others

Database, Volume 2018, 2018, bay089, https://doi.org/10.1093/database/bay089

The tragedy of the biodiversity data commons: a data impediment creeping nigher?

Nora Escribano and others

Database, Volume 2018, 2018, bay033, https://doi.org/10.1093/database/bay033

To increase trust, change the social design behind aggregated biodiversity data

Nico M Franz and Beckett W Sterner

Database, Volume 2018, 2018, bax100, https://doi.org/10.1093/database/bax100

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Erratum

TISSUES 2.0: an integrative web resource on mammalian tissue expression

Oana Palasca and others

Database, Volume 2018, 2018, bay028, https://doi.org/10.1093/database/bay028

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Review

A survey of ontology learning techniques and applications