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Volume 2018
2018
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EISSN 1758-0463

Volume 2018, 2018

Original Article

ConTEdb: a comprehensive database of transposable elements in conifers
Fei Yi and others
Database, Volume 2018, 2018, bay131, https://doi.org/10.1093/database/bay131
Foundry: a message-oriented, horizontally scalable ETL system for scientific data integration and enhancement
Ibrahim Burak Ozyurt and Jeffrey S Grethe
Database, Volume 2018, 2018, bay130, https://doi.org/10.1093/database/bay130
Accelerating annotation of articles via automated approaches: evaluation of the neXtA5 curation-support tool by neXtProt
Aurore Britan and others
Database, Volume 2018, 2018, bay129, https://doi.org/10.1093/database/bay129
iTextMine: integrated text-mining system for large-scale knowledge extraction from the literature
Jia Ren and others
Database, Volume 2018, 2018, bay128, https://doi.org/10.1093/database/bay128
Where differences resemble: sequence-feature analysis in curated databases of intrinsically disordered proteins
Marco Necci and others
Database, Volume 2018, 2018, bay127, https://doi.org/10.1093/database/bay127
BEL Commons: an environment for exploration and analysis of networks encoded in Biological Expression Language
Charles Tapley Hoyt and others
Database, Volume 2018, 2018, bay126, https://doi.org/10.1093/database/bay126
PhytoTypeDB: a database of plant protein inter-cultivar variability and function
Marco Necci and others
Database, Volume 2018, 2018, bay125, https://doi.org/10.1093/database/bay125
Cloud-based relational database for multimodal animal data
Niklas Pallast and others
Database, Volume 2018, 2018, bay124, https://doi.org/10.1093/database/bay124
NBDC RDF portal: a comprehensive repository for semantic data in life sciences
Shuichi Kawashima and others
Database, Volume 2018, 2018, bay123, https://doi.org/10.1093/database/bay123
BioCreative VI Precision Medicine Track system performance is constrained by entity recognition and variations in corpus characteristics
Qingyu Chen and others
Database, Volume 2018, 2018, bay122, https://doi.org/10.1093/database/bay122
Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems
Wasila Dahdul and others
Database, Volume 2018, 2018, bay110, https://doi.org/10.1093/database/bay110
ANCO-GeneDB: annotations and comprehensive analysis of candidate genes for alcohol, nicotine, cocaine and opioid dependence
Ruifeng Hu and others
Database, Volume 2018, 2018, bay121, https://doi.org/10.1093/database/bay121
Potent pairing: ensemble of long short-term memory networks and support vector machine for chemical-protein relation extraction
Farrokh Mehryary and others
Database, Volume 2018, 2018, bay120, https://doi.org/10.1093/database/bay120
RTPDB: a database providing associations between genetic variation or expression and cancer prognosis with radiotherapy-based treatment
Cheng-Dong Zhang and others
Database, Volume 2018, 2018, bay118, https://doi.org/10.1093/database/bay118
GCDB: a glaucomatous chemogenomics database for in silico drug discovery
Yu Wei and others
Database, Volume 2018, 2018, bay117, https://doi.org/10.1093/database/bay117
Gene ontology concept recognition using named concept: understanding the various presentations of the gene functions in biomedical literature
Chia-Jung Yang and Jung-Hsien Chiang
Database, Volume 2018, 2018, bay115, https://doi.org/10.1093/database/bay115
LPTK: a linguistic pattern-aware dependency tree kernel approach for the BioCreative VI CHEMPROT task
Neha Warikoo and others
Database, Volume 2018, 2018, bay108, https://doi.org/10.1093/database/bay108
MGH: a genome hub for the medicinal plant maca (Lepidium meyenii)
Junhao Chen and others
Database, Volume 2018, 2018, bay113, https://doi.org/10.1093/database/bay113
ZFLNC: a comprehensive and well-annotated database for zebrafish lncRNA
Xiang Hu and others
Database, Volume 2018, 2018, bay114, https://doi.org/10.1093/database/bay114
Overview of the BioCreative VI text-mining services for Kinome Curation Track
Julien Gobeill and others
Database, Volume 2018, 2018, bay104, https://doi.org/10.1093/database/bay104
siAbasic: a comprehensive database for potent siRNA-6Ø sequences without off-target effects
Jongyeun Park and others
Database, Volume 2018, 2018, bay109, https://doi.org/10.1093/database/bay109
Toward a service-based workflow for automated information extraction from herbarium specimens
Agnes Kirchhoff and others
Database, Volume 2018, 2018, bay103, https://doi.org/10.1093/database/bay103
Extracting chemical–protein relations using attention-based neural networks
Sijia Liu and others
Database, Volume 2018, 2018, bay102, https://doi.org/10.1093/database/bay102
AGD: Aneurysm Gene Database
Ruya Sun and others
Database, Volume 2018, 2018, bay100, https://doi.org/10.1093/database/bay100
Large-scale automated machine reading discovers new cancer-driving mechanisms
Marco A Valenzuela-Escárcega and others
Database, Volume 2018, 2018, bay098, https://doi.org/10.1093/database/bay098
Document triage for identifying protein–protein interactions affected by mutations: a neural network ensemble approach
Ling Luo and others
Database, Volume 2018, 2018, bay097, https://doi.org/10.1093/database/bay097
Wide-scope biomedical named entity recognition and normalization with CRFs, fuzzy matching and character level modeling
Suwisa Kaewphan and others
Database, Volume 2018, 2018, bay096, https://doi.org/10.1093/database/bay096
PalmXplore: oil palm gene database
Nik Shazana Nik Mohd Sanusi and others
Database, Volume 2018, 2018, bay095, https://doi.org/10.1093/database/bay095
An end-to-end deep learning architecture for extracting protein–protein interactions affected by genetic mutations
Tung Tran and Ramakanth Kavuluru
Database, Volume 2018, 2018, Pages 1–13, https://doi.org/10.1093/database/bay092
Assisting document triage for human kinome curation via machine learning
Yi-Yu Hsu and others
Database, Volume 2018, 2018, bay091, https://doi.org/10.1093/database/bay091
THE-DB: a threading model database for comparative protein structure analysis of the E. coli K12 and human proteomes
Justin S Diamond and Yang Zhang
Database, Volume 2018, 2018, bay090, https://doi.org/10.1093/database/bay090
AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture
Lisa Harper and others
Database, Volume 2018, 2018, bay088, https://doi.org/10.1093/database/bay088
lncSLdb: a resource for long non-coding RNA subcellular localization
Xiao Wen and others
Database, Volume 2018, 2018, bay085, https://doi.org/10.1093/database/bay085
Drug Target Commons 2.0: a community platform for systematic analysis of drug–target interaction profiles
ZiaurRehman Tanoli and others
Database, Volume 2018, 2018, bay083, https://doi.org/10.1093/database/bay083
SMMDB: a web-accessible database for small molecule modulators and their targets involved in neurological diseases
Subodh Kumar Mishra and others
Database, Volume 2018, 2018, bay082, https://doi.org/10.1093/database/bay082
PlaNC-TE: a comprehensive knowledgebase of non-coding RNAs and transposable elements in plants
Daniel Longhi Fernandes Pedro and others
Database, Volume 2018, 2018, bay078, https://doi.org/10.1093/database/bay078
A probabilistic automated tagger to identify human-related publications
Aaron M Cohen and others
Database, Volume 2018, 2018, bay079, https://doi.org/10.1093/database/bay079
Spfy: an integrated graph database for real-time prediction of bacterial phenotypes and downstream comparative analyses
Kevin K Le and others
Database, Volume 2018, 2018, bay086, https://doi.org/10.1093/database/bay086
MetaHCR: a web-enabled metagenome data management system for hydrocarbon resources
Peter C Marks and others
Database, Volume 2018, 2018, bay087, https://doi.org/10.1093/database/bay087
Hierarchical bi-directional attention-based RNNs for supporting document classification on protein–protein interactions affected by genetic mutations
Aris Fergadis and others
Database, Volume 2018, 2018, bay076, https://doi.org/10.1093/database/bay076
Extracting chemical–protein relations with ensembles of SVM and deep learning models
Yifan Peng and others
Database, Volume 2018, 2018, bay073, https://doi.org/10.1093/database/bay073
realDB: a genome and transcriptome resource for the red algae (phylum Rhodophyta)
Fei Chen and others
Database, Volume 2018, 2018, bay072, https://doi.org/10.1093/database/bay072
Leveraging prior knowledge for protein–protein interaction extraction with memory network
Huiwei Zhou and others
Database, Volume 2018, 2018, bay071, https://doi.org/10.1093/database/bay071
Improving the learning of chemical-protein interactions from literature using transfer learning and specialized word embeddings
P Corbett and J Boyle
Database, Volume 2018, 2018, bay066, https://doi.org/10.1093/database/bay066
A Field Sensor: computing the composition and intent of PubMed queries
Lana Yeganova and others
Database, Volume 2018, 2018, bay052, https://doi.org/10.1093/database/bay052
HRPDviewer: human ribosome profiling data viewer
Wei-Sheng Wu and others
Database, Volume 2018, 2018, bay074, https://doi.org/10.1093/database/bay074
A set of domain rules and a deep network for protein coreference resolution
Chen Li and others
Database, Volume 2018, 2018, bay065, https://doi.org/10.1093/database/bay065
CeleryDB: a genomic database for celery
Kai Feng and others
Database, Volume 2018, 2018, bay070, https://doi.org/10.1093/database/bay070
KM-express: an integrated online patient survival and gene expression analysis tool for the identification and functional characterization of prognostic markers in breast and prostate cancers
Xin Chen and others
Database, Volume 2018, 2018, bay069, https://doi.org/10.1093/database/bay069
Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes
Elton J R Vasconcelos and others
Database, Volume 2018, 2018, bay068, https://doi.org/10.1093/database/bay068
Identifying frequent patterns in biochemical reaction networks: a workflow
Fabienne Lambusch and others
Database, Volume 2018, 2018, bay051, https://doi.org/10.1093/database/bay051
A database of wild rice germplasm of Oryza rufipogon species complex from different agro-climatic zones of India
Kabita Tripathy and others
Database, Volume 2018, 2018, bay058, https://doi.org/10.1093/database/bay058
Improved biomedical term selection in pseudo relevance feedback
Muhammad Nabeel Asim and others
Database, Volume 2018, 2018, bay056, https://doi.org/10.1093/database/bay056
dbLGL: an online leukemia gene and literature database for the retrospective comparison of adult and childhood leukemia genetics with literature evidence
Yining Liu and others
Database, Volume 2018, 2018, bay062, https://doi.org/10.1093/database/bay062
Chemical–gene relation extraction using recursive neural network
Sangrak Lim and Jaewoo Kang
Database, Volume 2018, 2018, bay060, https://doi.org/10.1093/database/bay060
RBPMetaDB: a comprehensive annotation of mouse RNA-Seq datasets with perturbations of RNA-binding proteins
Jin Li and others
Database, Volume 2018, 2018, bay054, https://doi.org/10.1093/database/bay054
ILDgenDB: integrated genetic knowledge resource for interstitial lung diseases (ILDs)
Smriti Mishra and others
Database, Volume 2018, 2018, bay053, https://doi.org/10.1093/database/bay053
A systematic approach for identifying shared mechanisms in epilepsy and its comorbidities
Charles Tapley Hoyt and others
Database, Volume 2018, 2018, bay050, https://doi.org/10.1093/database/bay050
SPRENO: a BioC module for identifying organism terms in figure captions
Hong-Jie Dai and Onkar Singh
Database, Volume 2018, 2018, bay048, https://doi.org/10.1093/database/bay048
dbCRSR: a manually curated database for regulation of cancer radiosensitivity
Pengbo Wen and others
Database, Volume 2018, 2018, bay049, https://doi.org/10.1093/database/bay049
DEXTER: Disease-Expression Relation Extraction from Text
Samir Gupta and others
Database, Volume 2018, 2018, bay045, https://doi.org/10.1093/database/bay045
SolCyc: a database hub at the Sol Genomics Network (SGN) for the manual curation of metabolic networks in Solanum and Nicotiana specific databases
Hartmut Foerster and others
Database, Volume 2018, 2018, bay035, https://doi.org/10.1093/database/bay035
CircR2Disease: a manually curated database for experimentally supported circular RNAs associated with various diseases
Chunyan Fan and others
Database, Volume 2018, 2018, bay044, https://doi.org/10.1093/database/bay044
GEMiCCL: mining genotype and expression data of cancer cell lines with elaborate visualization
Inhae Jeong and others
Database, Volume 2018, 2018, bay041, https://doi.org/10.1093/database/bay041
AbDb: antibody structure database—a database of PDB-derived antibody structures
Saba Ferdous and Andrew C R Martin
Database, Volume 2018, 2018, bay040, https://doi.org/10.1093/database/bay040
PVCbase: an integrated web resource for the PVC bacterial proteomes
Nicola Bordin and others
Database, Volume 2018, 2018, bay042, https://doi.org/10.1093/database/bay042
StraPep: a structure database of bioactive peptides
Jian Wang and others
Database, Volume 2018, 2018, bay038, https://doi.org/10.1093/database/bay038
Signalling maps in cancer research: construction and data analysis
Maria Kondratova and others
Database, Volume 2018, 2018, bay036, https://doi.org/10.1093/database/bay036
An entropy-reducing data representation approach for bioinformatic data
Alan F McCulloch and others
Database, Volume 2018, 2018, bay029, https://doi.org/10.1093/database/bay029
Expert curation for building network-based dynamical models: a case study on atherosclerotic plaque formation
Amel Bekkar and others
Database, Volume 2018, 2018, bay031, https://doi.org/10.1093/database/bay031
A tutorial of diverse genome analysis tools found in the CoGe web-platform using Plasmodium spp. as a model
Andreina I Castillo and others
Database, Volume 2018, 2018, bay030, https://doi.org/10.1093/database/bay030
dbAMEPNI: a database of alanine mutagenic effects for protein–nucleic acid interactions
Ling Liu and others
Database, Volume 2018, 2018, bay034, https://doi.org/10.1093/database/bay034
Probabilistic and machine learning-based retrieval approaches for biomedical dataset retrieval
Payam Karisani and others
Database, Volume 2018, 2018, bax104, https://doi.org/10.1093/database/bax104
Improved ontology-based similarity calculations using a study-wise annotation model
Sebastian Köhler
Database, Volume 2018, 2018, bay026, https://doi.org/10.1093/database/bay026
GEOMetaCuration: a web-based application for accurate manual curation of Gene Expression Omnibus metadata
Zhao Li and others
Database, Volume 2018, 2018, bay019, https://doi.org/10.1093/database/bay019
CITGeneDB: a comprehensive database of human and mouse genes enhancing or suppressing cold-induced thermogenesis validated by perturbation experiments in mice
Jin Li and others
Database, Volume 2018, 2018, bay012, https://doi.org/10.1093/database/bay012
Finding relevant biomedical datasets: the UC San Diego solution for the bioCADDIE Retrieval Challenge
Wei Wei and others
Database, Volume 2018, 2018, bay017, https://doi.org/10.1093/database/bay017
PvaxDB: a comprehensive structural repository of Plasmodium vivax proteome
Ankita Singh and others
Database, Volume 2018, 2018, bay021, https://doi.org/10.1093/database/bay021
Baseline and extensions approach to information retrieval of complex medical data: Poznan's approach to the bioCADDIE 2016
Artur Cieslewicz and others
Database, Volume 2018, 2018, bax103, https://doi.org/10.1093/database/bax103
SPTEdb: a database for transposable elements in salicaceous plants
Fei Yi and others
Database, Volume 2018, 2018, bay024, https://doi.org/10.1093/database/bay024
YummyData: providing high-quality open life science data
Yasunori Yamamoto and others
Database, Volume 2018, 2018, bay022, https://doi.org/10.1093/database/bay022
The SNPcurator: literature mining of enriched SNP-disease associations
Noha S Tawfik and Marco R Spruit
Database, Volume 2018, 2018, bay020, https://doi.org/10.1093/database/bay020
NDDVD: an integrated and manually curated Neurodegenerative Diseases Variation Database
Yang Yang and others
Database, Volume 2018, 2018, bay018, https://doi.org/10.1093/database/bay018
Micropublication: incentivizing community curation and placing unpublished data into the public domain
Daniela Raciti and others
Database, Volume 2018, 2018, bay013, https://doi.org/10.1093/database/bay013
miRwayDB: a database for experimentally validated microRNA-pathway associations in pathophysiological conditions
Sankha Subhra Das and others
Database, Volume 2018, 2018, bay023, https://doi.org/10.1093/database/bay023
Prevention of data duplication for high throughput sequencing repositories
Idan Gabdank and others
Database, Volume 2018, 2018, bay008, https://doi.org/10.1093/database/bay008
TransAtlasDB: an integrated database connecting expression data, metadata and variants
Modupeore O Adetunji and others
Database, Volume 2018, 2018, bay014, https://doi.org/10.1093/database/bay014
The NCBI BioCollections Database
Shobha Sharma and others
Database, Volume 2018, 2018, bay006, https://doi.org/10.1093/database/bay006
AllerGAtlas 1.0: a human allergy-related genes database
Jinying Liu and others
Database, Volume 2018, 2018, bay010, https://doi.org/10.1093/database/bay010
Identification of errors in the IEDB using ontologies
Randi Vita and others
Database, Volume 2018, 2018, bay005, https://doi.org/10.1093/database/bay005
FAIR principles and the IEDB: short-term improvements and a long-term vision of OBO-foundry mediated machine-actionable interoperability
Randi Vita and others
Database, Volume 2018, 2018, bax105, https://doi.org/10.1093/database/bax105
Fungal Stress Database (FSD)––a repository of fungal stress physiological data
Erzsébet Orosz and others
Database, Volume 2018, 2018, bay009, https://doi.org/10.1093/database/bay009
OliveNet™: a comprehensive library of compounds from Olea europaea
Natalie P Bonvino and others
Database, Volume 2018, 2018, bay016, https://doi.org/10.1093/database/bay016
Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data
Jasmine Y Young and others
Database, Volume 2018, 2018, bay002, https://doi.org/10.1093/database/bay002
FishTEDB: a collective database of transposable elements identified in the complete genomes of fish
Feng Shao and others
Database, Volume 2018, 2018, bax106, https://doi.org/10.1093/database/bax106
A generic workflow for effective sampling of environmental vouchers with UUID assignment and image processing
Dagmar Triebel and others
Database, Volume 2018, 2018, bax096, https://doi.org/10.1093/database/bax096
YAAM: Yeast Amino Acid Modifications Database
Leonardo Ledesma and others
Database, Volume 2018, 2018, bax099, https://doi.org/10.1093/database/bax099

Database Update

Ensembl variation resources
Sarah E Hunt and others
Database, Volume 2018, 2018, bay119, https://doi.org/10.1093/database/bay119
Medicinal Materials DNA Barcode Database (MMDBD) version 1.5—one-stop solution for storage, BLAST, alignment and primer design
Tin-Hang Wong and others
Database, Volume 2018, 2018, bay112, https://doi.org/10.1093/database/bay112
AutismKB 2.0: a knowledgebase for the genetic evidence of autism spectrum disorder
Changhong Yang and others
Database, Volume 2018, 2018, bay106, https://doi.org/10.1093/database/bay106
Growing and cultivating the forest genomics database, TreeGenes
Taylor Falk and others
Database, Volume 2018, 2018, bay084, https://doi.org/10.1093/database/bay084
ChemDIS 2: an update of chemical-disease inference system
Chun-Wei Tung and Shan-Shan Wang
Database, Volume 2018, 2018, bay077, https://doi.org/10.1093/database/bay077
Biopanning data bank 2018: hugging next generation phage display
Bifang He and others
Database, Volume 2018, 2018, bay032, https://doi.org/10.1093/database/bay032
Updated regulation curation model at the Saccharomyces Genome Database
Stacia R Engel and others
Database, Volume 2018, 2018, bay007, https://doi.org/10.1093/database/bay007
dbDEPC 3.0: the database of differentially expressed proteins in human cancer with multi-level annotation and drug indication
Qingmin Yang and others
Database, Volume 2018, 2018, bay015, https://doi.org/10.1093/database/bay015
TISSUES 2.0: an integrative web resource on mammalian tissue expression
Oana Palasca and others
Database, Volume 2018, 2018, bay003, https://doi.org/10.1093/database/bay003
HTT-DB: new features and updates
Bruno Reis Dotto and others
Database, Volume 2018, 2018, bax102, https://doi.org/10.1093/database/bax102

Database Tool

YHMI: a web tool to identify histone modifications and histone/chromatin regulators from a gene list in yeast
Wei-Sheng Wu and others
Database, Volume 2018, 2018, bay116, https://doi.org/10.1093/database/bay116
VianniaTopes: a database of predicted immunogenic peptides for Leishmania (Viannia) species
Alejandro Llanes and others
Database, Volume 2018, 2018, bay111, https://doi.org/10.1093/database/bay111
GFDP: the gene family database in poplar
Hao Wang and others
Database, Volume 2018, 2018, bay107, https://doi.org/10.1093/database/bay107
PVsiRNAdb: a database for plant exclusive virus-derived small interfering RNAs
Nikita Gupta and others
Database, Volume 2018, 2018, bay105, https://doi.org/10.1093/database/bay105
Tripal Developer Toolkit
Bradford Condon and others
Database, Volume 2018, 2018, bay099, https://doi.org/10.1093/database/bay099
PubMed Labs: an experimental system for improving biomedical literature search
Nicolas Fiorini and others
Database, Volume 2018, 2018, bay094, https://doi.org/10.1093/database/bay094
ATD: a comprehensive bioinformatics resource for deciphering the association of autophagy and diseases
Wenjing Wang and others
Database, Volume 2018, 2018, bay093, https://doi.org/10.1093/database/bay093
WaspBase: a genomic resource for the interactions among parasitic wasps, insect hosts and plants
Longfei Chen and others
Database, Volume 2018, 2018, bay081, https://doi.org/10.1093/database/bay081
SAGE: a comprehensive resource of genetic variants integrating South Asian whole genomes and exomes
Judith Mary Hariprakash and others
Database, Volume 2018, 2018, bay080, https://doi.org/10.1093/database/bay080
HDncRNA: a comprehensive database of non-coding RNAs associated with heart diseases
Wen-Jing Wang and others
Database, Volume 2018, 2018, bay067, https://doi.org/10.1093/database/bay067
mutTCPdb: a comprehensive database for genomic variants of a tropical country neglected disease—tropical calcific pancreatitis
Garima Singh and others
Database, Volume 2018, 2018, bay043, https://doi.org/10.1093/database/bay043
RabGTD: a comprehensive database of rabbit genome and transcriptome
Lu Zhou and others
Database, Volume 2018, 2018, bay075, https://doi.org/10.1093/database/bay075
SDADB: a functional annotation database of protein structural domains
Cheng Zeng and others
Database, Volume 2018, 2018, bay064, https://doi.org/10.1093/database/bay064
IsopiRBank: a research resource for tracking piRNA isoforms
Huan Zhang and others
Database, Volume 2018, 2018, bay059, https://doi.org/10.1093/database/bay059
PtRFdb: a database for plant transfer RNA-derived fragments
Nikita Gupta and others
Database, Volume 2018, 2018, bay063, https://doi.org/10.1093/database/bay063
LncCeRBase: a database of experimentally validated human competing endogenous long non-coding RNAs
Cong Pian and others
Database, Volume 2018, 2018, bay061, https://doi.org/10.1093/database/bay061
MPD: a pathogen genome and metagenome database
Tingting Zhang and others
Database, Volume 2018, 2018, bay055, https://doi.org/10.1093/database/bay055
LeptoDB: an integrated database of genomics and proteomics resource of Leptospira
Shruti Beriwal and others
Database, Volume 2018, 2018, bay057, https://doi.org/10.1093/database/bay057
A comparative synteny analysis tool for target-gene SNP marker discovery: connecting genomics data to breeding in Solanaceae
Junkyoung Choe and others
Database, Volume 2018, 2018, bay047, https://doi.org/10.1093/database/bay047
CBD: a biomarker database for colorectal cancer
Xueli Zhang and others
Database, Volume 2018, 2018, bay046, https://doi.org/10.1093/database/bay046
LnChrom: a resource of experimentally validated lncRNA–chromatin interactions in human and mouse
Fulong Yu and others
Database, Volume 2018, 2018, bay039, https://doi.org/10.1093/database/bay039
SNPversity: a web-based tool for visualizing diversity
David A Schott and others
Database, Volume 2018, 2018, bay037, https://doi.org/10.1093/database/bay037
Maser: one-stop platform for NGS big data from analysis to visualization
Sonoko Kinjo and others
Database, Volume 2018, 2018, bay027, https://doi.org/10.1093/database/bay027
BioDataome: a collection of uniformly preprocessed and automatically annotated datasets for data-driven biology
Kleanthi Lakiotaki and others
Database, Volume 2018, 2018, bay011, https://doi.org/10.1093/database/bay011
AntiTbPdb: a knowledgebase of anti-tubercular peptides
Salman Sadullah Usmani and others
Database, Volume 2018, 2018, bay025, https://doi.org/10.1093/database/bay025
GAN: a platform of genomics and genetics analysis and application in Nicotiana
Shuai Yang and others
Database, Volume 2018, 2018, bay001, https://doi.org/10.1093/database/bay001
miRToolsGallery: a tag-based and rankable microRNA bioinformatics resources database portal
Liang Chen and others
Database, Volume 2018, 2018, bay004, https://doi.org/10.1093/database/bay004
CellExpress: a comprehensive microarray-based cancer cell line and clinical sample gene expression analysis online system
Yi-Fang Lee and others
Database, Volume 2018, 2018, bax101, https://doi.org/10.1093/database/bax101

Perspective/Opinion

Improved ontology for eukaryotic single-exon coding sequences in biological databases
Roddy Jorquera and others
Database, Volume 2018, 2018, bay089, https://doi.org/10.1093/database/bay089
The tragedy of the biodiversity data commons: a data impediment creeping nigher?
Nora Escribano and others
Database, Volume 2018, 2018, bay033, https://doi.org/10.1093/database/bay033
To increase trust, change the social design behind aggregated biodiversity data
Nico M Franz and Beckett W Sterner
Database, Volume 2018, 2018, bax100, https://doi.org/10.1093/database/bax100

Erratum

TISSUES 2.0: an integrative web resource on mammalian tissue expression
Oana Palasca and others
Database, Volume 2018, 2018, bay028, https://doi.org/10.1093/database/bay028

Review

A survey of ontology learning techniques and applications
Muhammad Nabeel Asim and others
Database, Volume 2018, 2018, bay101, https://doi.org/10.1093/database/bay101
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