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Volume 2019
2019
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EISSN 1758-0463

Volume 2019, 2019

EnhancerDB: a resource of transcriptional regulation in the context of enhancers
Ran Kang and others
Database, Volume 2019, 2019, bay141, https://doi.org/10.1093/database/bay141
PopTargs: a database for studying population evolutionary genetics of human microRNA target sites
Andrea Hatlen and others
Database, Volume 2019, 2019, baz102, https://doi.org/10.1093/database/baz102
KOFFI and Anabel 2.0—a new binding kinetics database and its integration in an open-source binding analysis software
Leo William Norval and others
Database, Volume 2019, 2019, baz101, https://doi.org/10.1093/database/baz101
BioSCOOP – Biobank Sample Communication Protocol. New approach for the transfer of information between biobanks
J Jarczak and others
Database, Volume 2019, 2019, baz105, https://doi.org/10.1093/database/baz105
Progress in the study of genome size evolution in Asteraceae: analysis of the last update
Daniel Vitales and others
Database, Volume 2019, 2019, baz098, https://doi.org/10.1093/database/baz098
RumimiR: a detailed microRNA database focused on ruminant species
Céline Bourdon and others
Database, Volume 2019, 2019, baz099, https://doi.org/10.1093/database/baz099
The extraction of complex relationships and their conversion to biological expression language (BEL) overview of the BioCreative VI (2017) BEL track
Sumit Madan and others
Database, Volume 2019, 2019, baz084, https://doi.org/10.1093/database/baz084
DeepScreening: a deep learning-based screening web server for accelerating drug discovery
Zhihong Liu and others
Database, Volume 2019, 2019, baz104, https://doi.org/10.1093/database/baz104
‘One DB to rule them all’—the RING: a Regulatory INteraction Graph combining TFs, genes/proteins, SNPs, diseases and drugs
Gianfranco Politano and others
Database, Volume 2019, 2019, baz108, https://doi.org/10.1093/database/baz108
SCNBase: a genomics portal for the soybean cyst nematode (Heterodera glycines)
Rick Masonbrink and others
Database, Volume 2019, 2019, baz111, https://doi.org/10.1093/database/baz111
Mabellini: a genome-wide database for understanding the structural proteome and evaluating prospective antimicrobial targets of the emerging pathogen Mycobacterium abscessus
Marcin J Skwark and others
Database, Volume 2019, 2019, baz113, https://doi.org/10.1093/database/baz113
RareLSD: a manually curated database of lysosomal enzymes associated with rare diseases
Sana Akhter and others
Database, Volume 2019, 2019, baz112, https://doi.org/10.1093/database/baz112
FoodBase corpus: a new resource of annotated food entities
Gorjan Popovski and others
Database, Volume 2019, 2019, baz121, https://doi.org/10.1093/database/baz121
PCIR: a database of Plant Chloroplast Inverted Repeats
Rui Zhang and others
Database, Volume 2019, 2019, baz127, https://doi.org/10.1093/database/baz127
Evaluation of an automatic article selection method for timelier updates of the Comet Core Outcome Set database
Christopher R Norman and others
Database, Volume 2019, 2019, baz109, https://doi.org/10.1093/database/baz109
MIRKB: a myocardial infarction risk knowledge base
Chaoying Zhan and others
Database, Volume 2019, 2019, baz125, https://doi.org/10.1093/database/baz125
Tripal MapViewer: A tool for interactive visualization and comparison of genetic maps
Katheryn Buble and others
Database, Volume 2019, 2019, baz100, https://doi.org/10.1093/database/baz100
Enabling semantic queries across federated bioinformatics databases
Ana Claudia Sima and others
Database, Volume 2019, 2019, baz106, https://doi.org/10.1093/database/baz106
RPGeNet v2.0: expanding the universe of retinal disease gene interactions network
Rodrigo Arenas-Galnares and others
Database, Volume 2019, 2019, baz120, https://doi.org/10.1093/database/baz120
PMBD: a Comprehensive Plastics Microbial Biodegradation Database
Zhiqiang Gan and Houjin Zhang
Database, Volume 2019, 2019, baz119, https://doi.org/10.1093/database/baz119
The Sickle Cell Disease Ontology: enabling universal sickle cell-based knowledge representation
Sickle Cell Disease Ontology Working Group
Database, Volume 2019, 2019, baz118, https://doi.org/10.1093/database/baz118
Representing glycophenotypes: semantic unification of glycobiology resources for disease discovery
Jean-Philippe F Gourdine and others
Database, Volume 2019, 2019, baz114, https://doi.org/10.1093/database/baz114
Identification of tRNA-derived ncRNAs in TCGA and NCI-60 panel cell lines and development of the public database tRFexplorer
Alessandro La Ferlita and others
Database, Volume 2019, 2019, baz115, https://doi.org/10.1093/database/baz115
A new unbiased and highly automated approach to find new prognostic markers in preclinical research
Martin Neidnicht and others
Database, Volume 2019, 2019, baz107, https://doi.org/10.1093/database/baz107
ODNA: a manually curated database of noncoding RNAs associated with orthopedics
Changcheng You and others
Database, Volume 2019, 2019, baz126, https://doi.org/10.1093/database/baz126
Machine learning approach to literature mining for the genetics of complex diseases
Jessica Schuster and others
Database, Volume 2019, 2019, baz124, https://doi.org/10.1093/database/baz124
Reactome and ORCID—fine-grained credit attribution for community curation
Guilherme Viteri and others
Database, Volume 2019, 2019, baz123, https://doi.org/10.1093/database/baz123
A general approach for improving deep learning-based medical relation extraction using a pre-trained model and fine-tuning
Tao Chen and others
Database, Volume 2019, 2019, baz116, https://doi.org/10.1093/database/baz116
RAACBook: a web server of reduced amino acid alphabet for sequence-dependent inference by using Chou’s five-step rule
Lei Zheng and others
Database, Volume 2019, 2019, baz131, https://doi.org/10.1093/database/baz131
Plant Regulomics Portal (PRP): a comprehensive integrated regulatory information and analysis portal for plant genomes
Ganesh Panzade and others
Database, Volume 2019, 2019, baz130, https://doi.org/10.1093/database/baz130
NeoPeptide: an immunoinformatic database of T-cell-defined neoantigens
Wei-Jun Zhou and others
Database, Volume 2019, 2019, baz128, https://doi.org/10.1093/database/baz128
Improved standardization of transcribed digital specimen data
Quentin Groom and others
Database, Volume 2019, 2019, baz129, https://doi.org/10.1093/database/baz129
GenoSurf: metadata driven semantic search system for integrated genomic datasets
Arif Canakoglu and others
Database, Volume 2019, 2019, baz132, https://doi.org/10.1093/database/baz132
UPObase: an online database of unspecific peroxygenases
Muniba Faiza and others
Database, Volume 2019, 2019, baz122, https://doi.org/10.1093/database/baz122
AcetoBase: a functional gene repository and database for formyltetrahydrofolate synthetase sequences
Abhijeet Singh and others
Database, Volume 2019, 2019, baz142, https://doi.org/10.1093/database/baz142
The human DEPhOsphorylation Database DEPOD: 2019 update
Nikhil P Damle and Maja Köhn
Database, Volume 2019, 2019, baz133, https://doi.org/10.1093/database/baz133
Mesophotic.org: a repository for scientific information on mesophotic ecosystems
Pim Bongaerts and others
Database, Volume 2019, 2019, baz140, https://doi.org/10.1093/database/baz140
SGID: a comprehensive and interactive database of the silkworm
Zhenglin Zhu and others
Database, Volume 2019, 2019, baz134, https://doi.org/10.1093/database/baz134
RHPCG: a database of the Regulation of the Hippo Pathway in Cancer Genome
Chengyu Wang and others
Database, Volume 2019, 2019, baz135, https://doi.org/10.1093/database/baz135
The COMPARE Data Hubs
Clara Amid and others
Database, Volume 2019, 2019, baz136, https://doi.org/10.1093/database/baz136

Original Article

Large expert-curated database for benchmarking document similarity detection in biomedical literature search
Peter Brown and others
Database, Volume 2019, 2019, baz085, https://doi.org/10.1093/database/baz085
NutriGenomeDB: a nutrigenomics exploratory and analytical platform
Roberto Martín-Hernández and others
Database, Volume 2019, 2019, baz097, https://doi.org/10.1093/database/baz097
ProtMiscuity: a database of promiscuous proteins
Ana Julia Velez Rueda and others
Database, Volume 2019, 2019, baz103, https://doi.org/10.1093/database/baz103
Extraction of chemical–protein interactions from the literature using neural networks and narrow instance representation
Rui Antunes and Sérgio Matos
Database, Volume 2019, 2019, baz095, https://doi.org/10.1093/database/baz095
RiceRelativesGD: a genomic database of rice relatives for rice research
Lingfeng Mao and others
Database, Volume 2019, 2019, baz110, https://doi.org/10.1093/database/baz110
CDEK: Clinical Drug Experience Knowledgebase
Rebekah H Griesenauer and others
Database, Volume 2019, 2019, baz087, https://doi.org/10.1093/database/baz087
PICEAdatabase: a web database for Picea omics and phenotypic information
Nan Lu and others
Database, Volume 2019, 2019, baz089, https://doi.org/10.1093/database/baz089
SOCCOMAS: a FAIR web content management system that uses knowledge graphs and that is based on semantic programming
Lars Vogt and others
Database, Volume 2019, 2019, baz067, https://doi.org/10.1093/database/baz067
An effective biomedical data migration tool from resource description framework to JSON
Jian Liu and others
Database, Volume 2019, 2019, baz088, https://doi.org/10.1093/database/baz088
VariED: the first integrated database of gene annotation and expression profiles for variants related to human diseases
Chien-Yueh Lee and others
Database, Volume 2019, 2019, baz075, https://doi.org/10.1093/database/baz075
Combined alignments of sequences and domains characterize unknown proteins with remotely related protein search PSISearch2D
Minglei Yang and others
Database, Volume 2019, 2019, baz092, https://doi.org/10.1093/database/baz092
Tripal v3: an ontology-based toolkit for construction of FAIR biological community databases
Shawna Spoor and others
Database, Volume 2019, 2019, baz077, https://doi.org/10.1093/database/baz077
IRAM: virus capsid database and analysis resource
Iman Almansour and others
Database, Volume 2019, 2019, baz079, https://doi.org/10.1093/database/baz079
MycoResistance: a curated resource of drug resistance molecules in Mycobacteria
Enyu Dai and others
Database, Volume 2019, 2019, baz074, https://doi.org/10.1093/database/baz074
A curated collection of transcriptome datasets to investigate the molecular mechanisms of immunoglobulin E-mediated atopic diseases
Susie S Y Huang and others
Database, Volume 2019, 2019, baz066, https://doi.org/10.1093/database/baz066
Semalytics: a semantic analytics platform for the exploration of distributed and heterogeneous cancer data in translational research
Andrea Mignone and others
Database, Volume 2019, 2019, baz080, https://doi.org/10.1093/database/baz080
Phytochelatin database: a resource for phytochelatin complexes of nutritional and environmental metals
Kristine K Dennis and others
Database, Volume 2019, 2019, baz083, https://doi.org/10.1093/database/baz083
PubMed Text Similarity Model and its application to curation efforts in the Conserved Domain Database
Rezarta Islamaj and others
Database, Volume 2019, 2019, baz064, https://doi.org/10.1093/database/baz064
PTSD Biomarker Database: deep dive metadatabase for PTSD biomarkers, visualizations and analysis tools
Daniel Domingo-Fernández and others
Database, Volume 2019, 2019, baz081, https://doi.org/10.1093/database/baz081
Oomycete Gene Table: an online database for comparative genomic analyses of the oomycete microorganisms
Thidarat Rujirawat and others
Database, Volume 2019, 2019, baz082, https://doi.org/10.1093/database/baz082
PRRDB 2.0: a comprehensive database of pattern-recognition receptors and their ligands
Dilraj Kaur and others
Database, Volume 2019, 2019, baz076, https://doi.org/10.1093/database/baz076
MolMeDB: Molecules on Membranes Database
Jakub Juračka and others
Database, Volume 2019, 2019, baz078, https://doi.org/10.1093/database/baz078
SeQuery: an interactive graph database for visualizing the GPCR superfamily
Geng-Ming Hu and others
Database, Volume 2019, 2019, baz073, https://doi.org/10.1093/database/baz073
MepmiRDB: a medicinal plant microRNA database
Dongliang Yu and others
Database, Volume 2019, 2019, baz070, https://doi.org/10.1093/database/baz070
Mr.Vc: a database of microarray and RNA-seq of Vibrio cholerae
Zhiyuan Zhang and others
Database, Volume 2019, 2019, baz069, https://doi.org/10.1093/database/baz069
AmyloWiki: an integrated database for Bacillus velezensis FZB42, the model strain for plant growth-promoting Bacilli
Ben Fan and others
Database, Volume 2019, 2019, baz071, https://doi.org/10.1093/database/baz071
CCRDB: a cancer circRNAs-related database and its application in hepatocellular carcinoma-related circRNAs
Qingyu Liu and others
Database, Volume 2019, 2019, baz063, https://doi.org/10.1093/database/baz063
Re-curation and rational enrichment of knowledge graphs in Biological Expression Language
Charles Tapley Hoyt and others
Database, Volume 2019, 2019, baz068, https://doi.org/10.1093/database/baz068
SpinachBase: a central portal for spinach genomics
Keeley Collins and others
Database, Volume 2019, 2019, baz072, https://doi.org/10.1093/database/baz072
Endometriosis Knowledgebase: a gene-based resource on endometriosis
Shaini Joseph and Smita D Mahale
Database, Volume 2019, 2019, baz062, https://doi.org/10.1093/database/baz062
Using association rule mining and ontologies to generate metadata recommendations from multiple biomedical databases
Marcos Martínez-Romero and others
Database, Volume 2019, 2019, baz059, https://doi.org/10.1093/database/baz059
Chickspress: a resource for chicken gene expression
Fiona M McCarthy and others
Database, Volume 2019, 2019, baz058, https://doi.org/10.1093/database/baz058
LanceletDB: an integrated genome database for lancelet, comparing domain types and combination in orthologues among lancelet and other species
Leiming You and others
Database, Volume 2019, 2019, baz056, https://doi.org/10.1093/database/baz056
VigSatDB: genome-wide microsatellite DNA marker database of three species of Vigna for germplasm characterization and improvement
Rahul Singh Jasrotia and others
Database, Volume 2019, 2019, baz055, https://doi.org/10.1093/database/baz055
Chemical–protein interaction extraction via contextualized word representations and multihead attention
Yijia Zhang and others
Database, Volume 2019, 2019, baz054, https://doi.org/10.1093/database/baz054
GIDB: a knowledge database for the automated curation and multidimensional analysis of molecular signatures in gastrointestinal cancer
Ying Wang and others
Database, Volume 2019, 2019, baz051, https://doi.org/10.1093/database/baz051
The MACADAM database: a MetAboliC pAthways DAtabase for Microbial taxonomic groups for mining potential metabolic capacities of archaeal and bacterial taxonomic groups
Malo Le Boulch and others
Database, Volume 2019, 2019, baz049, https://doi.org/10.1093/database/baz049
rPredictorDB: a predictive database of individual secondary structures of RNAs and their formatted plots
Jan Jelínek and others
Database, Volume 2019, 2019, baz047, https://doi.org/10.1093/database/baz047
An effective biomedical document classification scheme in support of biocuration: addressing class imbalance
Xiangying Jiang and others
Database, Volume 2019, 2019, baz045, https://doi.org/10.1093/database/baz045
CANCROX: a cross-species cancer therapy database
Paulo Muniz de Ávila and others
Database, Volume 2019, 2019, baz044, https://doi.org/10.1093/database/baz044
ChlamBase: a curated model organism database for the Chlamydia research community
Tim Putman and others
Database, Volume 2019, 2019, baz041, https://doi.org/10.1093/database/baz041
The Natural History Museum Data Portal
Ben Scott and others
Database, Volume 2019, 2019, baz038, https://doi.org/10.1093/database/baz038
PanglaoDB: a web server for exploration of mouse and human single-cell RNA sequencing data
Oscar Franzén and others
Database, Volume 2019, 2019, baz046, https://doi.org/10.1093/database/baz046
An enhanced workflow for variant interpretation in UniProtKB/Swiss-Prot improves consistency and reuse in ClinVar
M L Famiglietti and others
Database, Volume 2019, 2019, baz040, https://doi.org/10.1093/database/baz040
A dimensional warehouse for integrating operational data from clinical trials
Michael A Farnum and others
Database, Volume 2019, 2019, baz039, https://doi.org/10.1093/database/baz039
Quantitative phenotype analysis to identify, validate and compare rat disease models
Yiqing Zhao and others
Database, Volume 2019, 2019, baz037, https://doi.org/10.1093/database/baz037
Building deep learning models for evidence classification from the open access biomedical literature
Gully A Burns and others
Database, Volume 2019, 2019, baz034, https://doi.org/10.1093/database/baz034
AYbRAH: a curated ortholog database for yeasts and fungi spanning 600 million years of evolution
Kevin Correia and others
Database, Volume 2019, 2019, baz022, https://doi.org/10.1093/database/baz022
Curating gene sets: challenges and opportunities for integrative analysis
Jason Bubier and others
Database, Volume 2019, 2019, baz036, https://doi.org/10.1093/database/baz036
A late-binding, distributed, NoSQL warehouse for integrating patient data from clinical trials
Eric Yang and others
Database, Volume 2019, 2019, baz032, https://doi.org/10.1093/database/baz032
MSGP: the first database of the protein components of the mammalian stress granules
Catarina Nunes and others
Database, Volume 2019, 2019, baz031, https://doi.org/10.1093/database/baz031
YESdb: integrative analysis of environmental stress in yeast
Evi Berchtold and others
Database, Volume 2019, 2019, baz023, https://doi.org/10.1093/database/baz023
Ontology based text mining of gene-phenotype associations: application to candidate gene prediction
Şenay Kafkas and Robert Hoehndorf
Database, Volume 2019, 2019, baz019, https://doi.org/10.1093/database/baz019
Statistical principle-based approach for recognizing and normalizing microRNAs described in scientific literature
Hong-Jie Dai and others
Database, Volume 2019, 2019, baz030, https://doi.org/10.1093/database/baz030
Tetrahymena Comparative Genomics Database (TCGD): a community resource for Tetrahymena
Wentao Yang and others
Database, Volume 2019, 2019, baz029, https://doi.org/10.1093/database/baz029
PIRSitePredict for protein functional site prediction using position-specific rules
Chuming Chen and others
Database, Volume 2019, 2019, baz026, https://doi.org/10.1093/database/baz026
PamulDB: a comprehensive genomic resource for the study of human- and animal-pathogenic Pasteurella multocida
Tian Li and others
Database, Volume 2019, 2019, baz025, https://doi.org/10.1093/database/baz025
SuCComBase: a manually curated repository of plant sulfur-containing compounds
Sarahani Harun and others
Database, Volume 2019, 2019, baz021, https://doi.org/10.1093/database/baz021
EnDisease: a manually curated database for enhancer-disease associations
Wanwen Zeng and others
Database, Volume 2019, 2019, baz020, https://doi.org/10.1093/database/baz020
FairBase: a comprehensive database of fungal A-to-I RNA editing
Jinding Liu and others
Database, Volume 2019, 2019, baz018, https://doi.org/10.1093/database/baz018
A cross-source, system-agnostic solution for clinical data review
Michael A Farnum and others
Database, Volume 2019, 2019, baz017, https://doi.org/10.1093/database/baz017
RiceMetaSysB: a database of blast and bacterial blight responsive genes in rice and its utilization in identifying key blast-resistant WRKY genes
V Sureshkumar and others
Database, Volume 2019, 2019, baz015, https://doi.org/10.1093/database/baz015
Integrated curation and data mining for disease and phenotype models at the Rat Genome Database
Shur-Jen Wang and others
Database, Volume 2019, 2019, baz014, https://doi.org/10.1093/database/baz014
A scalable, aggregated genotypic–phenotypic database for human disease variation
Ryan Barrett and others
Database, Volume 2019, 2019, baz013, https://doi.org/10.1093/database/baz013
Using deep learning to identify translational research in genomic medicine beyond bench to bedside
Yi-Yu Hsu and others
Database, Volume 2019, 2019, baz010, https://doi.org/10.1093/database/baz010
The radish genome database (RadishGD): an integrated information resource for radish genomics
Hee-Ju Yu and others
Database, Volume 2019, 2019, baz009, https://doi.org/10.1093/database/baz009
Integration of macromolecular complex data into the Saccharomyces Genome Database
Edith D Wong and others
Database, Volume 2019, 2019, baz008, https://doi.org/10.1093/database/baz008
Annotation of gene product function from high-throughput studies using the Gene Ontology
Helen Attrill and others
Database, Volume 2019, 2019, baz007, https://doi.org/10.1093/database/baz007
ZincBind—the database of zinc binding sites
Sam M Ireland and Andrew C R Martin
Database, Volume 2019, 2019, baz006, https://doi.org/10.1093/database/baz006
APID database: redefining protein–protein interaction experimental evidences and binary interactomes
Diego Alonso-López and others
Database, Volume 2019, 2019, baz005, https://doi.org/10.1093/database/baz005
One tool to find them all: a case of data integration and querying in a distributed LIMS platform
Alberto Grand and others
Database, Volume 2019, 2019, baz004, https://doi.org/10.1093/database/baz004
Meta-omics data and collection objects (MOD-CO): a conceptual schema and data model for processing sample data in meta-omics research
Gerhard Rambold and others
Database, Volume 2019, 2019, baz002, https://doi.org/10.1093/database/baz002
Automatic identification of relevant chemical compounds from patents
Saber A Akhondi and others
Database, Volume 2019, 2019, baz001, https://doi.org/10.1093/database/baz001
Overview of the BioCreative VI Precision Medicine Track: mining protein interactions and mutations for precision medicine
Rezarta Islamaj Doğan and others
Database, Volume 2019, 2019, bay147, https://doi.org/10.1093/database/bay147
Towards comprehensive annotation of Drosophila melanogaster enzymes in FlyBase
Phani V Garapati and others
Database, Volume 2019, 2019, bay144, https://doi.org/10.1093/database/bay144
RRMdb—an evolutionary-oriented database of RNA recognition motif sequences
Martyna Nowacka and others
Database, Volume 2019, 2019, bay148, https://doi.org/10.1093/database/bay148
RAEdb: a database of enhancers identified by high-throughput reporter assays
Zena Cai and others
Database, Volume 2019, 2019, bay140, https://doi.org/10.1093/database/bay140
Enhanced taxonomy annotation of antiviral activity data from ChEMBL
Anastasia A Nikitina and others
Database, Volume 2019, 2019, bay139, https://doi.org/10.1093/database/bay139
Extracting chemical–protein interactions from literature using sentence structure analysis and feature engineering
Pei-Yau Lung and others
Database, Volume 2019, 2019, bay138, https://doi.org/10.1093/database/bay138
TogoGenome/TogoStanza: modularized Semantic Web genome database
Toshiaki Katayama and others
Database, Volume 2019, 2019, bay132, https://doi.org/10.1093/database/bay132
Combining relation extraction with function detection for BEL statement extraction
Suwen Liu and others
Database, Volume 2019, 2019, bay133, https://doi.org/10.1093/database/bay133

Database Update

Mammalian Annotation Database for improved annotation and functional classification of Omics datasets from less well-annotated organisms
Jochen T Bick and others
Database, Volume 2019, 2019, baz086, https://doi.org/10.1093/database/baz086
GrainGenes: centralized small grain resources and digital platform for geneticists and breeders
Victoria C Blake and others
Database, Volume 2019, 2019, baz065, https://doi.org/10.1093/database/baz065
YeasTSS: an integrative web database of yeast transcription start sites
Jonathan McMillan and others
Database, Volume 2019, 2019, baz048, https://doi.org/10.1093/database/baz048
GenDiS database update with improved approach and features to recognize homologous sequences of protein domain superfamilies
Meenakshi S Iyer and others
Database, Volume 2019, 2019, baz042, https://doi.org/10.1093/database/baz042
Update on cpnDB: a reference database of chaperonin sequences
Sarah J Vancuren and Janet E Hill
Database, Volume 2019, 2019, baz033, https://doi.org/10.1093/database/baz033
PASS2 version 6: a database of structure-based sequence alignments of protein domain superfamilies in accordance with SCOPe
Pritha Ghosh and others
Database, Volume 2019, 2019, baz028, https://doi.org/10.1093/database/baz028
Increased interactivity and improvements to the GigaScience database, GigaDB
Si Zhe Xiao and others
Database, Volume 2019, 2019, baz016, https://doi.org/10.1093/database/baz016
ImmunoSPdb: an archive of immunosuppressive peptides
Salman Sadullah Usmani and others
Database, Volume 2019, 2019, baz012, https://doi.org/10.1093/database/baz012
LIVE: a manually curated encyclopedia of experimentally validated interactions of lncRNAs
Gaole An and others
Database, Volume 2019, 2019, baz011, https://doi.org/10.1093/database/baz011
ccPDB 2.0: an updated version of datasets created and compiled from Protein Data Bank
Piyush Agrawal and others
Database, Volume 2019, 2019, bay142, https://doi.org/10.1093/database/bay142
The integrated National NeuroAIDS Tissue Consortium database: a rich platform for neuroHIV research
Abigail J Heithoff and others
Database, Volume 2019, 2019, bay134, https://doi.org/10.1093/database/bay134

Database Tool

ApicoTFdb: the comprehensive web repository of apicomplexan transcription factors and transcription-associated co-factors
Rahila Sardar and others
Database, Volume 2019, 2019, baz094, https://doi.org/10.1093/database/baz094
CasPDB: an integrated and annotated database for Cas proteins from bacteria and archaea
Zhongjie Tang and others
Database, Volume 2019, 2019, baz093, https://doi.org/10.1093/database/baz093
piRDisease v1.0: a manually curated database for piRNA associated diseases
Azhar Muhammad and others
Database, Volume 2019, 2019, baz052, https://doi.org/10.1093/database/baz052
A web-based tool for the prediction of rice transcription factor function
Anil Kumar Nalini Chandran and others
Database, Volume 2019, 2019, baz061, https://doi.org/10.1093/database/baz061
ResMarkerDB: a database of biomarkers of response to antibody therapy in breast and colorectal cancer
Judith Pérez-Granado and others
Database, Volume 2019, 2019, baz060, https://doi.org/10.1093/database/baz060
CropCircDB: a comprehensive circular RNA resource for crops in response to abiotic stress
Kai Wang and others
Database, Volume 2019, 2019, baz053, https://doi.org/10.1093/database/baz053
PlantMP: a database for moonlighting plant proteins
Bo Su and others
Database, Volume 2019, 2019, baz050, https://doi.org/10.1093/database/baz050
SELER: a database of super-enhancer-associated lncRNA- directed transcriptional regulation in human cancers
Zhi-Wei Guo and others
Database, Volume 2019, 2019, baz027, https://doi.org/10.1093/database/baz027
PKAD: a database of experimentally measured pKa values of ionizable groups in proteins
Swagata Pahari and others
Database, Volume 2019, 2019, baz024, https://doi.org/10.1093/database/baz024
CircFunBase: a database for functional circular RNAs
Xianwen Meng and others
Database, Volume 2019, 2019, baz003, https://doi.org/10.1093/database/baz003
Restructured GEO: restructuring Gene Expression Omnibus metadata for genome dynamics analysis
Guocai Chen and others
Database, Volume 2019, 2019, bay145, https://doi.org/10.1093/database/bay145
PubTerm: a web tool for organizing, annotating and curating genes, diseases, molecules and other concepts from PubMed records
José Garcia-Pelaez and others
Database, Volume 2019, 2019, bay137, https://doi.org/10.1093/database/bay137
TP53LNC-DB, the database of lncRNAs in the p53 signalling network
Muhammad Riaz Khan and others
Database, Volume 2019, 2019, bay136, https://doi.org/10.1093/database/bay136
AtFusionDB: a database of fusion transcripts in Arabidopsis thaliana
Ajeet Singh and others
Database, Volume 2019, 2019, bay135, https://doi.org/10.1093/database/bay135

Perspective/Opinion

Involving community in genes and pathway curation
Sushma Naithani and others
Database, Volume 2019, 2019, bay146, https://doi.org/10.1093/database/bay146

Technical Report

A manual corpus of annotated main findings of clinical case reports
Neil R Smalheiser and others
Database, Volume 2019, 2019, bay143, https://doi.org/10.1093/database/bay143

Corrigendum

ChlamBase: a curated model organism database for the Chlamydia research community
Tim Putman and others
Database, Volume 2019, 2019, baz091, https://doi.org/10.1093/database/baz091
LncCeRBase: a database of experimentally validated human competing endogenous long non-coding RNAs
Cong Pian and others
Database, Volume 2019, 2019, baz090, https://doi.org/10.1093/database/baz090
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