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Volume 2011, 2011
Editorial
BioMart: driving a paradigm change in biological data management
Database, Volume 2011, 2011, bar049, https://doi.org/10.1093/database/bar049
Towards BioDBcore: a community-defined information specification for biological databases
Database, Volume 2011, 2011, baq027, https://doi.org/10.1093/database/baq027
Original Articles
AnnotCompute: annotation-based exploration and meta-analysis of genomics experiments
Database, Volume 2011, 2011, bar045, https://doi.org/10.1093/database/bar045
RAC: Repository of Antibiotic resistance Cassettes
Database, Volume 2011, 2011, bar054, https://doi.org/10.1093/database/bar054
hUbiquitome: a database of experimentally verified ubiquitination cascades in humans
Database, Volume 2011, 2011, bar055, https://doi.org/10.1093/database/bar055
INOH: ontology-based highly structured database of signal transduction pathways
Database, Volume 2011, 2011, bar052, https://doi.org/10.1093/database/bar052
SalmonDB: a bioinformatics resource for Salmo salar and Oncorhynchus mykiss
Database, Volume 2011, 2011, bar050, https://doi.org/10.1093/database/bar050
The Reactome BioMart
Database, Volume 2011, 2011, bar031, https://doi.org/10.1093/database/bar031
The NIDDK Central Repository at 8 years—Ambition, Revision, Use and Impact
Database, Volume 2011, 2011, bar043, https://doi.org/10.1093/database/bar043
NetSlim: high-confidence curated signaling maps
Database, Volume 2011, 2011, bar032, https://doi.org/10.1093/database/bar032
BioMart: a data federation framework for large collaborative projects
Database, Volume 2011, 2011, bar038, https://doi.org/10.1093/database/bar038
BioMart Central Portal: an open database network for the biological community
Database, Volume 2011, 2011, bar041, https://doi.org/10.1093/database/bar041
Neisseria Base: a comparative genomics database for Neisseria meningitidis
Database, Volume 2011, 2011, bar035, https://doi.org/10.1093/database/bar035
The BioMart interface to the eMouseAtlas gene expression database EMAGE
Database, Volume 2011, 2011, bar029, https://doi.org/10.1093/database/bar029
BioMart as an integration solution for the International Knockout Mouse Consortium
Database, Volume 2011, 2011, bar028, https://doi.org/10.1093/database/bar028
International Cancer Genome Consortium Data Portal—a one-stop shop for cancer genomics data
Database, Volume 2011, 2011, bar026, https://doi.org/10.1093/database/bar026
SigReannot-mart: a query environment for expression microarray probe re-annotations
Database, Volume 2011, 2011, bar025, https://doi.org/10.1093/database/bar025
GETPrime: a gene- or transcript-specific primer database for quantitative real-time PCR
Database, Volume 2011, 2011, bar040, https://doi.org/10.1093/database/bar040
Integrative Cancer Genomics (IntOGen) in Biomart
Database, Volume 2011, 2011, bar039, https://doi.org/10.1093/database/bar039
The InterPro BioMart: federated query and web service access to the InterPro Resource
Database, Volume 2011, 2011, bar033, https://doi.org/10.1093/database/bar033
Ensembl BioMarts: a hub for data retrieval across taxonomic space
Database, Volume 2011, 2011, bar030, https://doi.org/10.1093/database/bar030
A comprehensive manually curated reaction map of RANKL/RANK-signaling pathway
Database, Volume 2011, 2011, bar021, https://doi.org/10.1093/database/bar021
Using BioMart as a framework to manage and query pancreatic cancer data
Database, Volume 2011, 2011, bar024, https://doi.org/10.1093/database/bar024
MaizeGDB: curation and outreach go hand-in-hand
Database, Volume 2011, 2011, bar022, https://doi.org/10.1093/database/bar022
Curation of characterized glycoside hydrolases of Fungal origin
Database, Volume 2011, 2011, bar020, https://doi.org/10.1093/database/bar020
Data mining using the Catalogue of Somatic Mutations in Cancer BioMart
Database, Volume 2011, 2011, bar018, https://doi.org/10.1093/database/bar018
Multi-source and ontology-based retrieval engine for maize mutant phenotypes
Database, Volume 2011, 2011, bar012, https://doi.org/10.1093/database/bar012
The MaizeGDB Genome Browser tutorial: one example of database outreach to biologists via video
Database, Volume 2011, 2011, bar016, https://doi.org/10.1093/database/bar016
TparvaDB: a database to support Theileria parva vaccine development
Database, Volume 2011, 2011, bar015, https://doi.org/10.1093/database/bar015
Methods and strategies for gene structure curation in WormBase
Database, Volume 2011, 2011, baq039, https://doi.org/10.1093/database/baq039
Integrating diverse databases into an unified analysis framework: a Galaxy approach
Database, Volume 2011, 2011, bar011, https://doi.org/10.1093/database/bar011
Allie: a database and a search service of abbreviations and long forms
Database, Volume 2011, 2011, bar013, https://doi.org/10.1093/database/bar013
The Rat Genome Database Pathway Portal
Database, Volume 2011, 2011, bar010, https://doi.org/10.1093/database/bar010
UniProt Knowledgebase: a hub of integrated protein data
Database, Volume 2011, 2011, bar009, https://doi.org/10.1093/database/bar009
Quality assurance for the query and distribution systems of the RCSB Protein Data Bank
Database, Volume 2011, 2011, bar003, https://doi.org/10.1093/database/bar003
FunSecKB: the Fungal Secretome KnowledgeBase
Database, Volume 2011, 2011, bar001, https://doi.org/10.1093/database/bar001
The Biomolecular Interaction Network Database in PSI-MI 2.5
Database, Volume 2011, 2011, baq037, https://doi.org/10.1093/database/baq037
LPS-annotate: complete annotation of compositionally biased regions in the protein knowledgebase
Database, Volume 2011, 2011, baq031, https://doi.org/10.1093/database/baq031
Database Tool
Tripal: a construction toolkit for online genome databases
Database, Volume 2011, 2011, bar044, https://doi.org/10.1093/database/bar044
3DSwap: curated knowledgebase of proteins involved in 3D domain swapping
Database, Volume 2011, 2011, bar042, https://doi.org/10.1093/database/bar042
ppiTrim: constructing non-redundant and up-to-date interactomes
Database, Volume 2011, 2011, bar036, https://doi.org/10.1093/database/bar036
Analysis and visualization of Arabidopsis thaliana GWAS using web 2.0 technologies
Database, Volume 2011, 2011, bar014, https://doi.org/10.1093/database/bar014
ParkDB: a Parkinson’s disease gene expression database
Database, Volume 2011, 2011, bar007, https://doi.org/10.1093/database/bar007
Review
PubMed and beyond: a survey of web tools for searching biomedical literature
Database, Volume 2011, 2011, baq036, https://doi.org/10.1093/database/baq036
Database Updates
The Histone Database: an integrated resource for histones and histone fold-containing proteins
Database, Volume 2011, 2011, bar048, https://doi.org/10.1093/database/bar048
